Cargando…

Automated identification of reference genes based on RNA-seq data

BACKGROUND: Gene expression analyses demand appropriate reference genes (RGs) for normalization, in order to obtain reliable assessments. Ideally, RG expression levels should remain constant in all cells, tissues or experimental conditions under study. Housekeeping genes traditionally fulfilled this...

Descripción completa

Detalles Bibliográficos
Autores principales:	Carmona, Rosario, Arroyo, Macarena, Jiménez-Quesada, María José, Seoane, Pedro, Zafra, Adoración, Larrosa, Rafael, Alché, Juan de Dios, Claros, M. Gonzalo
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2017
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5568602/ https://www.ncbi.nlm.nih.gov/pubmed/28830520 http://dx.doi.org/10.1186/s12938-017-0356-5

Ejemplares similares

Identification and Functional Annotation of Genes Differentially Expressed in the Reproductive Tissues of the Olive Tree (Olea europaea L.) through the Generation of Subtractive Libraries
por: Zafra, Adoración, et al.
Publicado: (2017)

Identification of novel superoxide dismutase isoenzymes in the olive (Olea europaea L.) pollen
por: Zafra, Adoración, et al.
Publicado: (2018)

ReprOlive: a database with linked data for the olive tree (Olea europaea L.) reproductive transcriptome
por: Carmona, Rosario, et al.
Publicado: (2015)

Identification and Assessment of the Potential Allergenicity of 7S Vicilins in Olive (Olea europaea L.) Seeds
por: Jimenez-Lopez, Jose C., et al.
Publicado: (2016)

S-nitroso- and nitro- proteomes in the olive (Olea europaea L.) pollen. Predictive versus experimental data by nano-LC-MS
por: Carmona, Rosario, et al.
Publicado: (2017)

Cellular localization of ROS and NO in olive reproductive tissues during flower development
por: Zafra, Adoración, et al.
Publicado: (2010)

Patterns of ROS Accumulation in the Stigmas of Angiosperms and Visions into Their Multi-Functionality in Plant Reproduction
por: Zafra, Adoración, et al.
Publicado: (2016)

TransFlow: a modular framework for assembling and assessing accurate de novo transcriptomes in non-model organisms
por: Seoane, Pedro, et al.
Publicado: (2018)

Biomarker potential of repetitive-element transcriptome in lung cancer
por: Arroyo, Macarena, et al.
Publicado: (2019)

Histological Features of the Olive Seed and Presence of 7S-Type Seed Storage Proteins as Hallmarks of the Olive Fruit Development
por: Zafra, Adoración, et al.
Publicado: (2018)

Construction of miRNA–mRNA networks for the identification of lung cancer biomarkers in liquid biopsies
por: Espinosa Garcia, Elena, et al.
Publicado: (2022)

NADPH Oxidase-Dependent Superoxide Production in Plant Reproductive Tissues
por: Jiménez-Quesada, María J., et al.
Publicado: (2016)

OliveAtlas: A Gene Expression Atlas Tool for Olea europaea
por: Bullones, Amanda, et al.
Publicado: (2023)

Transcriptomic Insight into the Pollen Tube Growth of Olea europaea L. subsp. europaea Reveals Reprogramming and Pollen-Specific Genes Including New Transcription Factors
por: Bullones, Amanda, et al.
Publicado: (2023)

Generation of Superoxide by OeRbohH, a NADPH Oxidase Activity During Olive (Olea europaea L.) Pollen Development and Germination
por: Jimenez-Quesada, María José, et al.
Publicado: (2019)

miRNA as biomarker in lung cancer
por: Lobera, Esperanza Salcedo, et al.
Publicado: (2023)

A concise appraisal of lipid oxidation and lipoxidation in higher plants
por: Alché, Juan de Dios
Publicado: (2019)

Identification of seed storage proteins as the major constituents of the extra virgin olive oil proteome
por: Castro, Antonio Jesús, et al.
Publicado: (2020)

The haustorial transcriptome of the cucurbit pathogen Podosphaera xanthii reveals new insights into the biotrophy and pathogenesis of powdery mildew fungi
por: Polonio, Álvaro, et al.
Publicado: (2019)

SPARTA: Simple Program for Automated reference-based bacterial RNA-seq Transcriptome Analysis
por: Johnson, Benjamin K., et al.
Publicado: (2016)

RUbioSeq: a suite of parallelized pipelines to automate exome variation and bisulfite-seq analyses
por: Rubio-Camarillo, Miriam, et al.
Publicado: (2013)

Tximeta: Reference sequence checksums for provenance identification in RNA-seq
por: Love, Michael I., et al.
Publicado: (2020)

SeqTrim: a high-throughput pipeline for pre-processing any type of sequence read
por: Falgueras, Juan, et al.
Publicado: (2010)

Why Assembling Plant Genome Sequences Is So Challenging
por: Claros, Manuel Gonzalo, et al.
Publicado: (2012)

Identification and localization of a caleosin in olive (Olea europaea L.) pollen during in vitro germination
por: Zienkiewicz, Krzysztof, et al.
Publicado: (2010)

Automated Identification of Referable Retinal Pathology in Teleophthalmology Setting
por: Gao, Qitong, et al.
Publicado: (2021)

Large-Scale Transcriptome Analysis in Faba Bean (Vicia faba L.) under Ascochyta fabae Infection
por: Ocaña, Sara, et al.
Publicado: (2015)

An improved de novo assembling and polishing of Solea senegalensis transcriptome shed light on retinoic acid signalling in larvae
por: Córdoba-Caballero, José, et al.
Publicado: (2020)

Disruption of the Auxin Gradient in the Abscission Zone Area Evokes Asymmetrical Changes Leading to Flower Separation in Yellow Lupine
por: Kućko, Agata, et al.
Publicado: (2020)

A comprehensive dataset of the extra virgin olive oil (EVOO) proteome
por: Castro, Antonio Jesús, et al.
Publicado: (2021)

Programmed home visits by nursing professionals to older adults: prevention or treatment?
por: Dios-Guerra, Caridad, et al.
Publicado: (2015)

Establishing gene models from the Pinus pinaster genome using gene capture and BAC sequencing
por: Seoane-Zonjic, Pedro, et al.
Publicado: (2016)

Spatio-temporal localization of LlBOP following early events of floral abscission in yellow lupine
por: Kućko, Agata, et al.
Publicado: (2019)

Glutathione redox state plays a key role in flower development and pollen vigour
por: García-Quirós, Estefanía, et al.
Publicado: (2020)

Microscopical Analysis of Autofluorescence as a Complementary and Useful Method to Assess Differences in Anatomy and Structural Distribution Underlying Evolutive Variation in Loss of Seed Dispersal in Common Bean
por: Santos, Ana M., et al.
Publicado: (2023)

Reference-free and cost-effective automated cell type annotation with GPT-4 in single-cell RNA-seq analysis
por: Hou, Wenpin, et al.
Publicado: (2023)

Reference-free and cost-effective automated cell type annotation with GPT-4 in single-cell RNA-seq analysis
por: Hou, Wenpin, et al.
Publicado: (2023)

Minor salivary gland biopsy in Sjögren’s syndrome: A review and introduction of a new tool to ease the procedure
por: Varela-Centelles, Pablo, et al.
Publicado: (2014)

Olive cultivar origin is a major cause of polymorphism for Ole e 1 pollen allergen
por: Hamman-Khalifa, AbdelMounim, et al.
Publicado: (2008)

RefSeq: an update on mammalian reference sequences
por: Pruitt, Kim D., et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_l5jpu5ta5h0cb2uu4t8snhkmb8