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Influence of parameter perturbations on the reachability of therapeutic target in systems with switchings

BACKGROUND: Examination of physiological processes and the influences of the drugs on them can be efficiently supported by mathematical modeling. One of the biggest problems is related to the exact fitting of the parameters of a model. Conditions inside the organism change dynamically, so the rates...

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Autores principales: Ochab, Magdalena, Puszynski, Krzysztof, Swierniak, Andrzej
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5568638/
https://www.ncbi.nlm.nih.gov/pubmed/28830427
http://dx.doi.org/10.1186/s12938-017-0360-9
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author Ochab, Magdalena
Puszynski, Krzysztof
Swierniak, Andrzej
author_facet Ochab, Magdalena
Puszynski, Krzysztof
Swierniak, Andrzej
author_sort Ochab, Magdalena
collection PubMed
description BACKGROUND: Examination of physiological processes and the influences of the drugs on them can be efficiently supported by mathematical modeling. One of the biggest problems is related to the exact fitting of the parameters of a model. Conditions inside the organism change dynamically, so the rates of processes are very difficult to estimate. Perturbations in the model parameters influence the steady state so a desired therapeutic goal may not be reached. Here we investigate the effect of parameter deviation on the steady state in three simple models of the influence of a therapeutic drug on its target protein. Two types of changes in the model parameters are taken into account: small perturbations in the system parameter values, and changes in the switching time of a specific parameter. Additionally, we examine the systems response in case of a drug concentration decreasing with time. RESULTS: The models which we analyze are simplified, because we want to avoid influences of complex dynamics on the results. A system with a negative feedback loop is the most robust and the most rapid, so it requires the largest drug dose but the effects are observed very quickly. On the other hand a system with positive feedback is very sensitive to changes, so small drug doses are sufficient to reach a therapeutic target. In systems without feedback or with positive feedback, perturbations in the model parameters have a bigger influence on the reachability of the therapeutic target than in systems with negative feedback. Drug degradation or inactivation in biological systems enforces multiple drug applications to maintain the level of a drug’s target under the desired threshold. The frequency of drug application should be fitted to the system dynamics, because the response velocity is tightly related to the therapeutic effectiveness and the time for achieving the goal. CONCLUSIONS: Systems with different types of regulation vary in their dynamics and characteristic features. Depending on the feedback loop, different types of therapy may be the most appropriate, and deviations in the model parameters have different influences on the reachability of the therapeutic target.
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spelling pubmed-55686382017-08-29 Influence of parameter perturbations on the reachability of therapeutic target in systems with switchings Ochab, Magdalena Puszynski, Krzysztof Swierniak, Andrzej Biomed Eng Online Research BACKGROUND: Examination of physiological processes and the influences of the drugs on them can be efficiently supported by mathematical modeling. One of the biggest problems is related to the exact fitting of the parameters of a model. Conditions inside the organism change dynamically, so the rates of processes are very difficult to estimate. Perturbations in the model parameters influence the steady state so a desired therapeutic goal may not be reached. Here we investigate the effect of parameter deviation on the steady state in three simple models of the influence of a therapeutic drug on its target protein. Two types of changes in the model parameters are taken into account: small perturbations in the system parameter values, and changes in the switching time of a specific parameter. Additionally, we examine the systems response in case of a drug concentration decreasing with time. RESULTS: The models which we analyze are simplified, because we want to avoid influences of complex dynamics on the results. A system with a negative feedback loop is the most robust and the most rapid, so it requires the largest drug dose but the effects are observed very quickly. On the other hand a system with positive feedback is very sensitive to changes, so small drug doses are sufficient to reach a therapeutic target. In systems without feedback or with positive feedback, perturbations in the model parameters have a bigger influence on the reachability of the therapeutic target than in systems with negative feedback. Drug degradation or inactivation in biological systems enforces multiple drug applications to maintain the level of a drug’s target under the desired threshold. The frequency of drug application should be fitted to the system dynamics, because the response velocity is tightly related to the therapeutic effectiveness and the time for achieving the goal. CONCLUSIONS: Systems with different types of regulation vary in their dynamics and characteristic features. Depending on the feedback loop, different types of therapy may be the most appropriate, and deviations in the model parameters have different influences on the reachability of the therapeutic target. BioMed Central 2017-08-18 /pmc/articles/PMC5568638/ /pubmed/28830427 http://dx.doi.org/10.1186/s12938-017-0360-9 Text en © The Author(s) 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research
Ochab, Magdalena
Puszynski, Krzysztof
Swierniak, Andrzej
Influence of parameter perturbations on the reachability of therapeutic target in systems with switchings
title Influence of parameter perturbations on the reachability of therapeutic target in systems with switchings
title_full Influence of parameter perturbations on the reachability of therapeutic target in systems with switchings
title_fullStr Influence of parameter perturbations on the reachability of therapeutic target in systems with switchings
title_full_unstemmed Influence of parameter perturbations on the reachability of therapeutic target in systems with switchings
title_short Influence of parameter perturbations on the reachability of therapeutic target in systems with switchings
title_sort influence of parameter perturbations on the reachability of therapeutic target in systems with switchings
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5568638/
https://www.ncbi.nlm.nih.gov/pubmed/28830427
http://dx.doi.org/10.1186/s12938-017-0360-9
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