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Influence of parameter perturbations on the reachability of therapeutic target in systems with switchings
BACKGROUND: Examination of physiological processes and the influences of the drugs on them can be efficiently supported by mathematical modeling. One of the biggest problems is related to the exact fitting of the parameters of a model. Conditions inside the organism change dynamically, so the rates...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5568638/ https://www.ncbi.nlm.nih.gov/pubmed/28830427 http://dx.doi.org/10.1186/s12938-017-0360-9 |
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author | Ochab, Magdalena Puszynski, Krzysztof Swierniak, Andrzej |
author_facet | Ochab, Magdalena Puszynski, Krzysztof Swierniak, Andrzej |
author_sort | Ochab, Magdalena |
collection | PubMed |
description | BACKGROUND: Examination of physiological processes and the influences of the drugs on them can be efficiently supported by mathematical modeling. One of the biggest problems is related to the exact fitting of the parameters of a model. Conditions inside the organism change dynamically, so the rates of processes are very difficult to estimate. Perturbations in the model parameters influence the steady state so a desired therapeutic goal may not be reached. Here we investigate the effect of parameter deviation on the steady state in three simple models of the influence of a therapeutic drug on its target protein. Two types of changes in the model parameters are taken into account: small perturbations in the system parameter values, and changes in the switching time of a specific parameter. Additionally, we examine the systems response in case of a drug concentration decreasing with time. RESULTS: The models which we analyze are simplified, because we want to avoid influences of complex dynamics on the results. A system with a negative feedback loop is the most robust and the most rapid, so it requires the largest drug dose but the effects are observed very quickly. On the other hand a system with positive feedback is very sensitive to changes, so small drug doses are sufficient to reach a therapeutic target. In systems without feedback or with positive feedback, perturbations in the model parameters have a bigger influence on the reachability of the therapeutic target than in systems with negative feedback. Drug degradation or inactivation in biological systems enforces multiple drug applications to maintain the level of a drug’s target under the desired threshold. The frequency of drug application should be fitted to the system dynamics, because the response velocity is tightly related to the therapeutic effectiveness and the time for achieving the goal. CONCLUSIONS: Systems with different types of regulation vary in their dynamics and characteristic features. Depending on the feedback loop, different types of therapy may be the most appropriate, and deviations in the model parameters have different influences on the reachability of the therapeutic target. |
format | Online Article Text |
id | pubmed-5568638 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-55686382017-08-29 Influence of parameter perturbations on the reachability of therapeutic target in systems with switchings Ochab, Magdalena Puszynski, Krzysztof Swierniak, Andrzej Biomed Eng Online Research BACKGROUND: Examination of physiological processes and the influences of the drugs on them can be efficiently supported by mathematical modeling. One of the biggest problems is related to the exact fitting of the parameters of a model. Conditions inside the organism change dynamically, so the rates of processes are very difficult to estimate. Perturbations in the model parameters influence the steady state so a desired therapeutic goal may not be reached. Here we investigate the effect of parameter deviation on the steady state in three simple models of the influence of a therapeutic drug on its target protein. Two types of changes in the model parameters are taken into account: small perturbations in the system parameter values, and changes in the switching time of a specific parameter. Additionally, we examine the systems response in case of a drug concentration decreasing with time. RESULTS: The models which we analyze are simplified, because we want to avoid influences of complex dynamics on the results. A system with a negative feedback loop is the most robust and the most rapid, so it requires the largest drug dose but the effects are observed very quickly. On the other hand a system with positive feedback is very sensitive to changes, so small drug doses are sufficient to reach a therapeutic target. In systems without feedback or with positive feedback, perturbations in the model parameters have a bigger influence on the reachability of the therapeutic target than in systems with negative feedback. Drug degradation or inactivation in biological systems enforces multiple drug applications to maintain the level of a drug’s target under the desired threshold. The frequency of drug application should be fitted to the system dynamics, because the response velocity is tightly related to the therapeutic effectiveness and the time for achieving the goal. CONCLUSIONS: Systems with different types of regulation vary in their dynamics and characteristic features. Depending on the feedback loop, different types of therapy may be the most appropriate, and deviations in the model parameters have different influences on the reachability of the therapeutic target. BioMed Central 2017-08-18 /pmc/articles/PMC5568638/ /pubmed/28830427 http://dx.doi.org/10.1186/s12938-017-0360-9 Text en © The Author(s) 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Ochab, Magdalena Puszynski, Krzysztof Swierniak, Andrzej Influence of parameter perturbations on the reachability of therapeutic target in systems with switchings |
title | Influence of parameter perturbations on the reachability of therapeutic target in systems with switchings |
title_full | Influence of parameter perturbations on the reachability of therapeutic target in systems with switchings |
title_fullStr | Influence of parameter perturbations on the reachability of therapeutic target in systems with switchings |
title_full_unstemmed | Influence of parameter perturbations on the reachability of therapeutic target in systems with switchings |
title_short | Influence of parameter perturbations on the reachability of therapeutic target in systems with switchings |
title_sort | influence of parameter perturbations on the reachability of therapeutic target in systems with switchings |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5568638/ https://www.ncbi.nlm.nih.gov/pubmed/28830427 http://dx.doi.org/10.1186/s12938-017-0360-9 |
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