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USA National Phenology Network’s volunteer-contributed observations yield predictive models of phenological transitions

PURPOSE: In support of science and society, the USA National Phenology Network (USA-NPN) maintains a rapidly growing, continental-scale, species-rich dataset of plant and animal phenology observations that with over 10 million records is the largest such database in the United States. The aim of thi...

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Autores principales: Crimmins, Theresa M., Crimmins, Michael A., Gerst, Katharine L., Rosemartin, Alyssa H., Weltzin, Jake F.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5568737/
https://www.ncbi.nlm.nih.gov/pubmed/28829783
http://dx.doi.org/10.1371/journal.pone.0182919
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author Crimmins, Theresa M.
Crimmins, Michael A.
Gerst, Katharine L.
Rosemartin, Alyssa H.
Weltzin, Jake F.
author_facet Crimmins, Theresa M.
Crimmins, Michael A.
Gerst, Katharine L.
Rosemartin, Alyssa H.
Weltzin, Jake F.
author_sort Crimmins, Theresa M.
collection PubMed
description PURPOSE: In support of science and society, the USA National Phenology Network (USA-NPN) maintains a rapidly growing, continental-scale, species-rich dataset of plant and animal phenology observations that with over 10 million records is the largest such database in the United States. The aim of this study was to explore the potential that exists in the broad and rich volunteer-collected dataset maintained by the USA-NPN for constructing models predicting the timing of phenological transition across species’ ranges within the continental United States. Contributed voluntarily by professional and citizen scientists, these opportunistically collected observations are characterized by spatial clustering, inconsistent spatial and temporal sampling, and short temporal depth (2009-present). Whether data exhibiting such limitations can be used to develop predictive models appropriate for use across large geographic regions has not yet been explored. METHODS: We constructed predictive models for phenophases that are the most abundant in the database and also relevant to management applications for all species with available data, regardless of plant growth habit, location, geographic extent, or temporal depth of the observations. We implemented a very basic model formulation—thermal time models with a fixed start date. RESULTS: Sufficient data were available to construct 107 individual species × phenophase models. Remarkably, given the limited temporal depth of this dataset and the simple modeling approach used, fifteen of these models (14%) met our criteria for model fit and error. The majority of these models represented the “breaking leaf buds” and “leaves” phenophases and represented shrub or tree growth forms. Accumulated growing degree day (GDD) thresholds that emerged ranged from 454 GDDs (Amelanchier canadensis-breaking leaf buds) to 1,300 GDDs (Prunus serotina-open flowers). Such candidate thermal time thresholds can be used to produce real-time and short-term forecast maps of the timing of these phenophase transition. In addition, many of the candidate models that emerged were suitable for use across the majority of the species’ geographic ranges. Real-time and forecast maps of phenophase transitions could support a wide range of natural resource management applications, including invasive plant management, issuing asthma and allergy alerts, and anticipating frost damage for crops in vulnerable states. IMPLICATIONS: Our finding that several viable thermal time threshold models that work across the majority of the species ranges could be constructed from the USA-NPN database provides clear evidence that great potential exists this dataset to develop more enhanced predictive models for additional species and phenophases. Further, the candidate models that emerged have immediate utility for supporting a wide range of management applications.
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spelling pubmed-55687372017-09-09 USA National Phenology Network’s volunteer-contributed observations yield predictive models of phenological transitions Crimmins, Theresa M. Crimmins, Michael A. Gerst, Katharine L. Rosemartin, Alyssa H. Weltzin, Jake F. PLoS One Research Article PURPOSE: In support of science and society, the USA National Phenology Network (USA-NPN) maintains a rapidly growing, continental-scale, species-rich dataset of plant and animal phenology observations that with over 10 million records is the largest such database in the United States. The aim of this study was to explore the potential that exists in the broad and rich volunteer-collected dataset maintained by the USA-NPN for constructing models predicting the timing of phenological transition across species’ ranges within the continental United States. Contributed voluntarily by professional and citizen scientists, these opportunistically collected observations are characterized by spatial clustering, inconsistent spatial and temporal sampling, and short temporal depth (2009-present). Whether data exhibiting such limitations can be used to develop predictive models appropriate for use across large geographic regions has not yet been explored. METHODS: We constructed predictive models for phenophases that are the most abundant in the database and also relevant to management applications for all species with available data, regardless of plant growth habit, location, geographic extent, or temporal depth of the observations. We implemented a very basic model formulation—thermal time models with a fixed start date. RESULTS: Sufficient data were available to construct 107 individual species × phenophase models. Remarkably, given the limited temporal depth of this dataset and the simple modeling approach used, fifteen of these models (14%) met our criteria for model fit and error. The majority of these models represented the “breaking leaf buds” and “leaves” phenophases and represented shrub or tree growth forms. Accumulated growing degree day (GDD) thresholds that emerged ranged from 454 GDDs (Amelanchier canadensis-breaking leaf buds) to 1,300 GDDs (Prunus serotina-open flowers). Such candidate thermal time thresholds can be used to produce real-time and short-term forecast maps of the timing of these phenophase transition. In addition, many of the candidate models that emerged were suitable for use across the majority of the species’ geographic ranges. Real-time and forecast maps of phenophase transitions could support a wide range of natural resource management applications, including invasive plant management, issuing asthma and allergy alerts, and anticipating frost damage for crops in vulnerable states. IMPLICATIONS: Our finding that several viable thermal time threshold models that work across the majority of the species ranges could be constructed from the USA-NPN database provides clear evidence that great potential exists this dataset to develop more enhanced predictive models for additional species and phenophases. Further, the candidate models that emerged have immediate utility for supporting a wide range of management applications. Public Library of Science 2017-08-22 /pmc/articles/PMC5568737/ /pubmed/28829783 http://dx.doi.org/10.1371/journal.pone.0182919 Text en https://creativecommons.org/publicdomain/zero/1.0/ This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 (https://creativecommons.org/publicdomain/zero/1.0/) public domain dedication.
spellingShingle Research Article
Crimmins, Theresa M.
Crimmins, Michael A.
Gerst, Katharine L.
Rosemartin, Alyssa H.
Weltzin, Jake F.
USA National Phenology Network’s volunteer-contributed observations yield predictive models of phenological transitions
title USA National Phenology Network’s volunteer-contributed observations yield predictive models of phenological transitions
title_full USA National Phenology Network’s volunteer-contributed observations yield predictive models of phenological transitions
title_fullStr USA National Phenology Network’s volunteer-contributed observations yield predictive models of phenological transitions
title_full_unstemmed USA National Phenology Network’s volunteer-contributed observations yield predictive models of phenological transitions
title_short USA National Phenology Network’s volunteer-contributed observations yield predictive models of phenological transitions
title_sort usa national phenology network’s volunteer-contributed observations yield predictive models of phenological transitions
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5568737/
https://www.ncbi.nlm.nih.gov/pubmed/28829783
http://dx.doi.org/10.1371/journal.pone.0182919
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