Cargando…
Targeted next-generation sequencing analysis identifies novel mutations in families with severe familial exudative vitreoretinopathy
PURPOSE: Familial exudative vitreoretinopathy (FEVR) is a genetically and clinically heterogeneous disease, characterized by failure of vascular development of the peripheral retina. The symptoms of FEVR vary widely among patients in the same family, and even between the two eyes of a given patient....
Autores principales: | , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Molecular Vision
2017
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5568910/ https://www.ncbi.nlm.nih.gov/pubmed/28867931 |
_version_ | 1783258900012728320 |
---|---|
author | Huang, Xiao-Yan Zhuang, Hong Wu, Ji-Hong Li, Jian-Kang Hu, Fang-Yuan Zheng, Yu Tellier, Laurent Christian Asker M. Zhang, Sheng-Hai Gao, Feng-Juan Zhang, Jian-Guo Xu, Ge-Zhi |
author_facet | Huang, Xiao-Yan Zhuang, Hong Wu, Ji-Hong Li, Jian-Kang Hu, Fang-Yuan Zheng, Yu Tellier, Laurent Christian Asker M. Zhang, Sheng-Hai Gao, Feng-Juan Zhang, Jian-Guo Xu, Ge-Zhi |
author_sort | Huang, Xiao-Yan |
collection | PubMed |
description | PURPOSE: Familial exudative vitreoretinopathy (FEVR) is a genetically and clinically heterogeneous disease, characterized by failure of vascular development of the peripheral retina. The symptoms of FEVR vary widely among patients in the same family, and even between the two eyes of a given patient. This study was designed to identify the genetic defect in a patient cohort of ten Chinese families with a definitive diagnosis of FEVR. METHODS: To identify the causative gene, next-generation sequencing (NGS)-based target capture sequencing was performed. Segregation analysis of the candidate variant was performed in additional family members by using Sanger sequencing and quantitative real-time PCR (QPCR). RESULTS: Of the cohort of ten FEVR families, six pathogenic variants were identified, including four novel and two known heterozygous mutations. Of the variants identified, four were missense variants, and two were novel heterozygous deletion mutations [LRP5, c.4053 DelC (p.Ile1351IlefsX88); TSPAN12, EX8Del]. The two novel heterozygous deletion mutations were not observed in the control subjects and could give rise to a relatively severe FEVR phenotype, which could be explained by the protein function prediction. CONCLUSIONS: We identified two novel heterozygous deletion mutations [LRP5, c.4053 DelC (p.Ile1351IlefsX88); TSPAN12, EX8Del] using targeted NGS as a causative mutation for FEVR. These genetic deletion variations exhibit a severe form of FEVR, with tractional retinal detachments compared with other known point mutations. The data further enrich the mutation spectrum of FEVR and enhance our understanding of genotype–phenotype correlations to provide useful information for disease diagnosis, prognosis, and effective genetic counseling. |
format | Online Article Text |
id | pubmed-5568910 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Molecular Vision |
record_format | MEDLINE/PubMed |
spelling | pubmed-55689102017-09-01 Targeted next-generation sequencing analysis identifies novel mutations in families with severe familial exudative vitreoretinopathy Huang, Xiao-Yan Zhuang, Hong Wu, Ji-Hong Li, Jian-Kang Hu, Fang-Yuan Zheng, Yu Tellier, Laurent Christian Asker M. Zhang, Sheng-Hai Gao, Feng-Juan Zhang, Jian-Guo Xu, Ge-Zhi Mol Vis Research Article PURPOSE: Familial exudative vitreoretinopathy (FEVR) is a genetically and clinically heterogeneous disease, characterized by failure of vascular development of the peripheral retina. The symptoms of FEVR vary widely among patients in the same family, and even between the two eyes of a given patient. This study was designed to identify the genetic defect in a patient cohort of ten Chinese families with a definitive diagnosis of FEVR. METHODS: To identify the causative gene, next-generation sequencing (NGS)-based target capture sequencing was performed. Segregation analysis of the candidate variant was performed in additional family members by using Sanger sequencing and quantitative real-time PCR (QPCR). RESULTS: Of the cohort of ten FEVR families, six pathogenic variants were identified, including four novel and two known heterozygous mutations. Of the variants identified, four were missense variants, and two were novel heterozygous deletion mutations [LRP5, c.4053 DelC (p.Ile1351IlefsX88); TSPAN12, EX8Del]. The two novel heterozygous deletion mutations were not observed in the control subjects and could give rise to a relatively severe FEVR phenotype, which could be explained by the protein function prediction. CONCLUSIONS: We identified two novel heterozygous deletion mutations [LRP5, c.4053 DelC (p.Ile1351IlefsX88); TSPAN12, EX8Del] using targeted NGS as a causative mutation for FEVR. These genetic deletion variations exhibit a severe form of FEVR, with tractional retinal detachments compared with other known point mutations. The data further enrich the mutation spectrum of FEVR and enhance our understanding of genotype–phenotype correlations to provide useful information for disease diagnosis, prognosis, and effective genetic counseling. Molecular Vision 2017-08-23 /pmc/articles/PMC5568910/ /pubmed/28867931 Text en Copyright © 2017 Molecular Vision. http://creativecommons.org/licenses/by-nc-nd/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited, used for non-commercial purposes, and is not altered or transformed. |
spellingShingle | Research Article Huang, Xiao-Yan Zhuang, Hong Wu, Ji-Hong Li, Jian-Kang Hu, Fang-Yuan Zheng, Yu Tellier, Laurent Christian Asker M. Zhang, Sheng-Hai Gao, Feng-Juan Zhang, Jian-Guo Xu, Ge-Zhi Targeted next-generation sequencing analysis identifies novel mutations in families with severe familial exudative vitreoretinopathy |
title | Targeted next-generation sequencing analysis identifies novel mutations in families with severe familial exudative vitreoretinopathy |
title_full | Targeted next-generation sequencing analysis identifies novel mutations in families with severe familial exudative vitreoretinopathy |
title_fullStr | Targeted next-generation sequencing analysis identifies novel mutations in families with severe familial exudative vitreoretinopathy |
title_full_unstemmed | Targeted next-generation sequencing analysis identifies novel mutations in families with severe familial exudative vitreoretinopathy |
title_short | Targeted next-generation sequencing analysis identifies novel mutations in families with severe familial exudative vitreoretinopathy |
title_sort | targeted next-generation sequencing analysis identifies novel mutations in families with severe familial exudative vitreoretinopathy |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5568910/ https://www.ncbi.nlm.nih.gov/pubmed/28867931 |
work_keys_str_mv | AT huangxiaoyan targetednextgenerationsequencinganalysisidentifiesnovelmutationsinfamilieswithseverefamilialexudativevitreoretinopathy AT zhuanghong targetednextgenerationsequencinganalysisidentifiesnovelmutationsinfamilieswithseverefamilialexudativevitreoretinopathy AT wujihong targetednextgenerationsequencinganalysisidentifiesnovelmutationsinfamilieswithseverefamilialexudativevitreoretinopathy AT lijiankang targetednextgenerationsequencinganalysisidentifiesnovelmutationsinfamilieswithseverefamilialexudativevitreoretinopathy AT hufangyuan targetednextgenerationsequencinganalysisidentifiesnovelmutationsinfamilieswithseverefamilialexudativevitreoretinopathy AT zhengyu targetednextgenerationsequencinganalysisidentifiesnovelmutationsinfamilieswithseverefamilialexudativevitreoretinopathy AT tellierlaurentchristianaskerm targetednextgenerationsequencinganalysisidentifiesnovelmutationsinfamilieswithseverefamilialexudativevitreoretinopathy AT zhangshenghai targetednextgenerationsequencinganalysisidentifiesnovelmutationsinfamilieswithseverefamilialexudativevitreoretinopathy AT gaofengjuan targetednextgenerationsequencinganalysisidentifiesnovelmutationsinfamilieswithseverefamilialexudativevitreoretinopathy AT zhangjianguo targetednextgenerationsequencinganalysisidentifiesnovelmutationsinfamilieswithseverefamilialexudativevitreoretinopathy AT xugezhi targetednextgenerationsequencinganalysisidentifiesnovelmutationsinfamilieswithseverefamilialexudativevitreoretinopathy |