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Olelo: a web application for intuitive exploration of biomedical literature
Researchers usually query the large biomedical literature in PubMed via keywords, logical operators and filters, none of which is very intuitive. Question answering systems are an alternative to keyword searches. They allow questions in natural language as input and results reflect the given type of...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5570143/ https://www.ncbi.nlm.nih.gov/pubmed/28472397 http://dx.doi.org/10.1093/nar/gkx363 |
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author | Kraus, Milena Niedermeier, Julian Jankrift, Marcel Tietböhl, Sören Stachewicz, Toni Folkerts, Hendrik Uflacker, Matthias Neves, Mariana |
author_facet | Kraus, Milena Niedermeier, Julian Jankrift, Marcel Tietböhl, Sören Stachewicz, Toni Folkerts, Hendrik Uflacker, Matthias Neves, Mariana |
author_sort | Kraus, Milena |
collection | PubMed |
description | Researchers usually query the large biomedical literature in PubMed via keywords, logical operators and filters, none of which is very intuitive. Question answering systems are an alternative to keyword searches. They allow questions in natural language as input and results reflect the given type of question, such as short answers and summaries. Few of those systems are available online but they experience drawbacks in terms of long response times and they support a limited amount of question and result types. Additionally, user interfaces are usually restricted to only displaying the retrieved information. For our Olelo web application, we combined biomedical literature and terminologies in a fast in-memory database to enable real-time responses to researchers’ queries. Further, we extended the built-in natural language processing features of the database with question answering and summarization procedures. Combined with a new explorative approach of document filtering and a clean user interface, Olelo enables a fast and intelligent search through the ever-growing biomedical literature. Olelo is available at http://www.hpi.de/plattner/olelo. |
format | Online Article Text |
id | pubmed-5570143 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-55701432017-08-29 Olelo: a web application for intuitive exploration of biomedical literature Kraus, Milena Niedermeier, Julian Jankrift, Marcel Tietböhl, Sören Stachewicz, Toni Folkerts, Hendrik Uflacker, Matthias Neves, Mariana Nucleic Acids Res Web Server Issue Researchers usually query the large biomedical literature in PubMed via keywords, logical operators and filters, none of which is very intuitive. Question answering systems are an alternative to keyword searches. They allow questions in natural language as input and results reflect the given type of question, such as short answers and summaries. Few of those systems are available online but they experience drawbacks in terms of long response times and they support a limited amount of question and result types. Additionally, user interfaces are usually restricted to only displaying the retrieved information. For our Olelo web application, we combined biomedical literature and terminologies in a fast in-memory database to enable real-time responses to researchers’ queries. Further, we extended the built-in natural language processing features of the database with question answering and summarization procedures. Combined with a new explorative approach of document filtering and a clean user interface, Olelo enables a fast and intelligent search through the ever-growing biomedical literature. Olelo is available at http://www.hpi.de/plattner/olelo. Oxford University Press 2017-07-03 2017-05-03 /pmc/articles/PMC5570143/ /pubmed/28472397 http://dx.doi.org/10.1093/nar/gkx363 Text en © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Web Server Issue Kraus, Milena Niedermeier, Julian Jankrift, Marcel Tietböhl, Sören Stachewicz, Toni Folkerts, Hendrik Uflacker, Matthias Neves, Mariana Olelo: a web application for intuitive exploration of biomedical literature |
title | Olelo: a web application for intuitive exploration of biomedical literature |
title_full | Olelo: a web application for intuitive exploration of biomedical literature |
title_fullStr | Olelo: a web application for intuitive exploration of biomedical literature |
title_full_unstemmed | Olelo: a web application for intuitive exploration of biomedical literature |
title_short | Olelo: a web application for intuitive exploration of biomedical literature |
title_sort | olelo: a web application for intuitive exploration of biomedical literature |
topic | Web Server Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5570143/ https://www.ncbi.nlm.nih.gov/pubmed/28472397 http://dx.doi.org/10.1093/nar/gkx363 |
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