Cargando…

Olelo: a web application for intuitive exploration of biomedical literature

Researchers usually query the large biomedical literature in PubMed via keywords, logical operators and filters, none of which is very intuitive. Question answering systems are an alternative to keyword searches. They allow questions in natural language as input and results reflect the given type of...

Descripción completa

Detalles Bibliográficos
Autores principales: Kraus, Milena, Niedermeier, Julian, Jankrift, Marcel, Tietböhl, Sören, Stachewicz, Toni, Folkerts, Hendrik, Uflacker, Matthias, Neves, Mariana
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5570143/
https://www.ncbi.nlm.nih.gov/pubmed/28472397
http://dx.doi.org/10.1093/nar/gkx363
_version_ 1783259127896604672
author Kraus, Milena
Niedermeier, Julian
Jankrift, Marcel
Tietböhl, Sören
Stachewicz, Toni
Folkerts, Hendrik
Uflacker, Matthias
Neves, Mariana
author_facet Kraus, Milena
Niedermeier, Julian
Jankrift, Marcel
Tietböhl, Sören
Stachewicz, Toni
Folkerts, Hendrik
Uflacker, Matthias
Neves, Mariana
author_sort Kraus, Milena
collection PubMed
description Researchers usually query the large biomedical literature in PubMed via keywords, logical operators and filters, none of which is very intuitive. Question answering systems are an alternative to keyword searches. They allow questions in natural language as input and results reflect the given type of question, such as short answers and summaries. Few of those systems are available online but they experience drawbacks in terms of long response times and they support a limited amount of question and result types. Additionally, user interfaces are usually restricted to only displaying the retrieved information. For our Olelo web application, we combined biomedical literature and terminologies in a fast in-memory database to enable real-time responses to researchers’ queries. Further, we extended the built-in natural language processing features of the database with question answering and summarization procedures. Combined with a new explorative approach of document filtering and a clean user interface, Olelo enables a fast and intelligent search through the ever-growing biomedical literature. Olelo is available at http://www.hpi.de/plattner/olelo.
format Online
Article
Text
id pubmed-5570143
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-55701432017-08-29 Olelo: a web application for intuitive exploration of biomedical literature Kraus, Milena Niedermeier, Julian Jankrift, Marcel Tietböhl, Sören Stachewicz, Toni Folkerts, Hendrik Uflacker, Matthias Neves, Mariana Nucleic Acids Res Web Server Issue Researchers usually query the large biomedical literature in PubMed via keywords, logical operators and filters, none of which is very intuitive. Question answering systems are an alternative to keyword searches. They allow questions in natural language as input and results reflect the given type of question, such as short answers and summaries. Few of those systems are available online but they experience drawbacks in terms of long response times and they support a limited amount of question and result types. Additionally, user interfaces are usually restricted to only displaying the retrieved information. For our Olelo web application, we combined biomedical literature and terminologies in a fast in-memory database to enable real-time responses to researchers’ queries. Further, we extended the built-in natural language processing features of the database with question answering and summarization procedures. Combined with a new explorative approach of document filtering and a clean user interface, Olelo enables a fast and intelligent search through the ever-growing biomedical literature. Olelo is available at http://www.hpi.de/plattner/olelo. Oxford University Press 2017-07-03 2017-05-03 /pmc/articles/PMC5570143/ /pubmed/28472397 http://dx.doi.org/10.1093/nar/gkx363 Text en © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Web Server Issue
Kraus, Milena
Niedermeier, Julian
Jankrift, Marcel
Tietböhl, Sören
Stachewicz, Toni
Folkerts, Hendrik
Uflacker, Matthias
Neves, Mariana
Olelo: a web application for intuitive exploration of biomedical literature
title Olelo: a web application for intuitive exploration of biomedical literature
title_full Olelo: a web application for intuitive exploration of biomedical literature
title_fullStr Olelo: a web application for intuitive exploration of biomedical literature
title_full_unstemmed Olelo: a web application for intuitive exploration of biomedical literature
title_short Olelo: a web application for intuitive exploration of biomedical literature
title_sort olelo: a web application for intuitive exploration of biomedical literature
topic Web Server Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5570143/
https://www.ncbi.nlm.nih.gov/pubmed/28472397
http://dx.doi.org/10.1093/nar/gkx363
work_keys_str_mv AT krausmilena oleloawebapplicationforintuitiveexplorationofbiomedicalliterature
AT niedermeierjulian oleloawebapplicationforintuitiveexplorationofbiomedicalliterature
AT jankriftmarcel oleloawebapplicationforintuitiveexplorationofbiomedicalliterature
AT tietbohlsoren oleloawebapplicationforintuitiveexplorationofbiomedicalliterature
AT stachewicztoni oleloawebapplicationforintuitiveexplorationofbiomedicalliterature
AT folkertshendrik oleloawebapplicationforintuitiveexplorationofbiomedicalliterature
AT uflackermatthias oleloawebapplicationforintuitiveexplorationofbiomedicalliterature
AT nevesmariana oleloawebapplicationforintuitiveexplorationofbiomedicalliterature