Cargando…

GeSeq – versatile and accurate annotation of organelle genomes

We have developed the web application GeSeq (https://chlorobox.mpimp-golm.mpg.de/geseq.html) for the rapid and accurate annotation of organellar genome sequences, in particular chloroplast genomes. In contrast to existing tools, GeSeq combines batch processing with a fully customizable reference seq...

Descripción completa

Detalles Bibliográficos
Autores principales:	Tillich, Michael, Lehwark, Pascal, Pellizzer, Tommaso, Ulbricht-Jones, Elena S., Fischer, Axel, Bock, Ralph, Greiner, Stephan
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2017
Materias:	Web Server Issue
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5570176/ https://www.ncbi.nlm.nih.gov/pubmed/28486635 http://dx.doi.org/10.1093/nar/gkx391

Ejemplares similares

OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes
por: Greiner, Stephan, et al.
Publicado: (2019)

CRISPRloci: comprehensive and accurate annotation of CRISPR–Cas systems
por: Alkhnbashi, Omer S, et al.
Publicado: (2021)

DEB: A web interface for RNA-seq digital gene expression analysis
por: Yao, Ji Qiang, et al.
Publicado: (2011)

LIPPRED: A web server for accurate prediction of lipoprotein signal sequences and cleavage sites
por: Taylor, Paul D, et al.
Publicado: (2006)

NetGO 3.0: Protein Language Model Improves Large-scale Functional Annotations
por: Wang, Shaojun, et al.
Publicado: (2023)

CFM-ID 4.0 – a web server for accurate MS-based metabolite identification
por: Wang, Fei, et al.
Publicado: (2022)

AnnotSV and knotAnnotSV: a web server for human structural variations annotations, ranking and analysis
por: Geoffroy, Véronique, et al.
Publicado: (2021)

BioTransformer 3.0—a web server for accurately predicting metabolic transformation products
por: Wishart, David S, et al.
Publicado: (2022)

The Bologna Annotation Resource (BAR 3.0): improving protein functional annotation
por: Profiti, Giuseppe, et al.
Publicado: (2017)

OpenAnnotate: a web server to annotate the chromatin accessibility of genomic regions
por: Chen, Shengquan, et al.
Publicado: (2021)

Annotation Query (AnnoQ): an integrated and interactive platform for large-scale genetic variant annotation
por: Liu, Zhu, et al.
Publicado: (2022)

pLannotate: engineered plasmid annotation
por: McGuffie, Matthew J, et al.
Publicado: (2021)

FlyNet: a versatile network prioritization server for the Drosophila community
por: Shin, Junha, et al.
Publicado: (2015)

ChIP-Atlas 2021 update: a data-mining suite for exploring epigenomic landscapes by fully integrating ChIP-seq, ATAC-seq and Bisulfite-seq data
por: Zou, Zhaonan, et al.
Publicado: (2022)

LigAdvisor: a versatile and user-friendly web-platform for drug design
por: Pinzi, Luca, et al.
Publicado: (2021)

piNET: a versatile web platform for downstream analysis and visualization of proteomics data
por: Shamsaei, Behrouz, et al.
Publicado: (2020)

miEAA: microRNA enrichment analysis and annotation
por: Backes, Christina, et al.
Publicado: (2016)

CPGAVAS2, an integrated plastome sequence annotator and analyzer
por: Shi, Linchun, et al.
Publicado: (2019)

RNAmod: an integrated system for the annotation of mRNA modifications
por: Liu, Qi, et al.
Publicado: (2019)

RegulationSpotter: annotation and interpretation of extratranscriptic DNA variants
por: Schwarz, Jana Marie, et al.
Publicado: (2019)

Deep phenotyping: symptom annotation made simple with SAMS
por: Steinhaus, Robin, et al.
Publicado: (2022)

The AnnotSV webserver in 2023: updated visualization and ranking
por: Geoffroy, Véronique, et al.
Publicado: (2023)

PSI/TM-Coffee: a web server for fast and accurate multiple sequence alignments of regular and transmembrane proteins using homology extension on reduced databases
por: Floden, Evan W., et al.
Publicado: (2016)

PASSer: fast and accurate prediction of protein allosteric sites
por: Tian, Hao, et al.
Publicado: (2023)

StructMAn: annotation of single-nucleotide polymorphisms in the structural context
por: Gress, Alexander, et al.
Publicado: (2016)

Companion: a web server for annotation and analysis of parasite genomes
por: Steinbiss, Sascha, et al.
Publicado: (2016)

RNApdbee 2.0: multifunctional tool for RNA structure annotation
por: Zok, Tomasz, et al.
Publicado: (2018)

PANNZER2: a rapid functional annotation web server
por: Törönen, Petri, et al.
Publicado: (2018)

SPAR: small RNA-seq portal for analysis of sequencing experiments
por: Kuksa, Pavel P, et al.
Publicado: (2018)

dbCAN3: automated carbohydrate-active enzyme and substrate annotation
por: Zheng, Jinfang, et al.
Publicado: (2023)

ICARUS, an interactive web server for single cell RNA-seq analysis
por: Jiang, Andrew, et al.
Publicado: (2022)

DeepGOWeb: fast and accurate protein function prediction on the (Semantic) Web
por: Kulmanov, Maxat, et al.
Publicado: (2021)

PathwAX: a web server for network crosstalk based pathway annotation
por: Ogris, Christoph, et al.
Publicado: (2016)

BusyBee Web: metagenomic data analysis by bootstrapped supervised binning and annotation
por: Laczny, Cedric C., et al.
Publicado: (2017)

Evolview v3: a webserver for visualization, annotation, and management of phylogenetic trees
por: Subramanian, Balakrishnan, et al.
Publicado: (2019)

ANANASTRA: annotation and enrichment analysis of allele-specific transcription factor binding at SNPs
por: Boytsov, Alexandr, et al.
Publicado: (2022)

NORMSEQ: a tool for evaluation, selection and visualization of RNA-Seq normalization methods
por: Scheepbouwer, Chantal, et al.
Publicado: (2023)

PSICA: a fast and accurate web service for protein model quality analysis
por: Wang, Wenbo, et al.
Publicado: (2019)

Evolview v2: an online visualization and management tool for customized and annotated phylogenetic trees
por: He, Zilong, et al.
Publicado: (2016)

dbCAN2: a meta server for automated carbohydrate-active enzyme annotation
por: Zhang, Han, et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_o2fpf4sr9u41etp98e7bk7aclo