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A systematic model identification method for chemical transformation pathways – the case of heroin biomarkers in wastewater
This study presents a novel statistical approach for identifying sequenced chemical transformation pathways in combination with reaction kinetics models. The proposed method relies on sound uncertainty propagation by considering parameter ranges and associated probability distribution obtained at an...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5571155/ https://www.ncbi.nlm.nih.gov/pubmed/28839237 http://dx.doi.org/10.1038/s41598-017-09313-y |
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author | Ramin, Pedram Valverde-Pérez, Borja Polesel, Fabio Locatelli, Luca Plósz, Benedek Gy. |
author_facet | Ramin, Pedram Valverde-Pérez, Borja Polesel, Fabio Locatelli, Luca Plósz, Benedek Gy. |
author_sort | Ramin, Pedram |
collection | PubMed |
description | This study presents a novel statistical approach for identifying sequenced chemical transformation pathways in combination with reaction kinetics models. The proposed method relies on sound uncertainty propagation by considering parameter ranges and associated probability distribution obtained at any given transformation pathway levels as priors for parameter estimation at any subsequent transformation levels. The method was applied to calibrate a model predicting the transformation in untreated wastewater of six biomarkers, excreted following human metabolism of heroin and codeine. The method developed was compared to parameter estimation methods commonly encountered in literature (i.e., estimation of all parameters at the same time and parameter estimation with fix values for upstream parameters) by assessing the model prediction accuracy, parameter identifiability and uncertainty analysis. Results obtained suggest that the method developed has the potential to outperform conventional approaches in terms of prediction accuracy, transformation pathway identification and parameter identifiability. This method can be used in conjunction with optimal experimental designs to effectively identify model structures and parameters. This method can also offer a platform to promote a closer interaction between analytical chemists and modellers to identify models for biochemical transformation pathways, being a prominent example for the emerging field of wastewater-based epidemiology. |
format | Online Article Text |
id | pubmed-5571155 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-55711552017-09-01 A systematic model identification method for chemical transformation pathways – the case of heroin biomarkers in wastewater Ramin, Pedram Valverde-Pérez, Borja Polesel, Fabio Locatelli, Luca Plósz, Benedek Gy. Sci Rep Article This study presents a novel statistical approach for identifying sequenced chemical transformation pathways in combination with reaction kinetics models. The proposed method relies on sound uncertainty propagation by considering parameter ranges and associated probability distribution obtained at any given transformation pathway levels as priors for parameter estimation at any subsequent transformation levels. The method was applied to calibrate a model predicting the transformation in untreated wastewater of six biomarkers, excreted following human metabolism of heroin and codeine. The method developed was compared to parameter estimation methods commonly encountered in literature (i.e., estimation of all parameters at the same time and parameter estimation with fix values for upstream parameters) by assessing the model prediction accuracy, parameter identifiability and uncertainty analysis. Results obtained suggest that the method developed has the potential to outperform conventional approaches in terms of prediction accuracy, transformation pathway identification and parameter identifiability. This method can be used in conjunction with optimal experimental designs to effectively identify model structures and parameters. This method can also offer a platform to promote a closer interaction between analytical chemists and modellers to identify models for biochemical transformation pathways, being a prominent example for the emerging field of wastewater-based epidemiology. Nature Publishing Group UK 2017-08-24 /pmc/articles/PMC5571155/ /pubmed/28839237 http://dx.doi.org/10.1038/s41598-017-09313-y Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Ramin, Pedram Valverde-Pérez, Borja Polesel, Fabio Locatelli, Luca Plósz, Benedek Gy. A systematic model identification method for chemical transformation pathways – the case of heroin biomarkers in wastewater |
title | A systematic model identification method for chemical transformation pathways – the case of heroin biomarkers in wastewater |
title_full | A systematic model identification method for chemical transformation pathways – the case of heroin biomarkers in wastewater |
title_fullStr | A systematic model identification method for chemical transformation pathways – the case of heroin biomarkers in wastewater |
title_full_unstemmed | A systematic model identification method for chemical transformation pathways – the case of heroin biomarkers in wastewater |
title_short | A systematic model identification method for chemical transformation pathways – the case of heroin biomarkers in wastewater |
title_sort | systematic model identification method for chemical transformation pathways – the case of heroin biomarkers in wastewater |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5571155/ https://www.ncbi.nlm.nih.gov/pubmed/28839237 http://dx.doi.org/10.1038/s41598-017-09313-y |
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