Cargando…

A systematic model identification method for chemical transformation pathways – the case of heroin biomarkers in wastewater

This study presents a novel statistical approach for identifying sequenced chemical transformation pathways in combination with reaction kinetics models. The proposed method relies on sound uncertainty propagation by considering parameter ranges and associated probability distribution obtained at an...

Descripción completa

Detalles Bibliográficos
Autores principales: Ramin, Pedram, Valverde-Pérez, Borja, Polesel, Fabio, Locatelli, Luca, Plósz, Benedek Gy.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5571155/
https://www.ncbi.nlm.nih.gov/pubmed/28839237
http://dx.doi.org/10.1038/s41598-017-09313-y
_version_ 1783259301151768576
author Ramin, Pedram
Valverde-Pérez, Borja
Polesel, Fabio
Locatelli, Luca
Plósz, Benedek Gy.
author_facet Ramin, Pedram
Valverde-Pérez, Borja
Polesel, Fabio
Locatelli, Luca
Plósz, Benedek Gy.
author_sort Ramin, Pedram
collection PubMed
description This study presents a novel statistical approach for identifying sequenced chemical transformation pathways in combination with reaction kinetics models. The proposed method relies on sound uncertainty propagation by considering parameter ranges and associated probability distribution obtained at any given transformation pathway levels as priors for parameter estimation at any subsequent transformation levels. The method was applied to calibrate a model predicting the transformation in untreated wastewater of six biomarkers, excreted following human metabolism of heroin and codeine. The method developed was compared to parameter estimation methods commonly encountered in literature (i.e., estimation of all parameters at the same time and parameter estimation with fix values for upstream parameters) by assessing the model prediction accuracy, parameter identifiability and uncertainty analysis. Results obtained suggest that the method developed has the potential to outperform conventional approaches in terms of prediction accuracy, transformation pathway identification and parameter identifiability. This method can be used in conjunction with optimal experimental designs to effectively identify model structures and parameters. This method can also offer a platform to promote a closer interaction between analytical chemists and modellers to identify models for biochemical transformation pathways, being a prominent example for the emerging field of wastewater-based epidemiology.
format Online
Article
Text
id pubmed-5571155
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-55711552017-09-01 A systematic model identification method for chemical transformation pathways – the case of heroin biomarkers in wastewater Ramin, Pedram Valverde-Pérez, Borja Polesel, Fabio Locatelli, Luca Plósz, Benedek Gy. Sci Rep Article This study presents a novel statistical approach for identifying sequenced chemical transformation pathways in combination with reaction kinetics models. The proposed method relies on sound uncertainty propagation by considering parameter ranges and associated probability distribution obtained at any given transformation pathway levels as priors for parameter estimation at any subsequent transformation levels. The method was applied to calibrate a model predicting the transformation in untreated wastewater of six biomarkers, excreted following human metabolism of heroin and codeine. The method developed was compared to parameter estimation methods commonly encountered in literature (i.e., estimation of all parameters at the same time and parameter estimation with fix values for upstream parameters) by assessing the model prediction accuracy, parameter identifiability and uncertainty analysis. Results obtained suggest that the method developed has the potential to outperform conventional approaches in terms of prediction accuracy, transformation pathway identification and parameter identifiability. This method can be used in conjunction with optimal experimental designs to effectively identify model structures and parameters. This method can also offer a platform to promote a closer interaction between analytical chemists and modellers to identify models for biochemical transformation pathways, being a prominent example for the emerging field of wastewater-based epidemiology. Nature Publishing Group UK 2017-08-24 /pmc/articles/PMC5571155/ /pubmed/28839237 http://dx.doi.org/10.1038/s41598-017-09313-y Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Ramin, Pedram
Valverde-Pérez, Borja
Polesel, Fabio
Locatelli, Luca
Plósz, Benedek Gy.
A systematic model identification method for chemical transformation pathways – the case of heroin biomarkers in wastewater
title A systematic model identification method for chemical transformation pathways – the case of heroin biomarkers in wastewater
title_full A systematic model identification method for chemical transformation pathways – the case of heroin biomarkers in wastewater
title_fullStr A systematic model identification method for chemical transformation pathways – the case of heroin biomarkers in wastewater
title_full_unstemmed A systematic model identification method for chemical transformation pathways – the case of heroin biomarkers in wastewater
title_short A systematic model identification method for chemical transformation pathways – the case of heroin biomarkers in wastewater
title_sort systematic model identification method for chemical transformation pathways – the case of heroin biomarkers in wastewater
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5571155/
https://www.ncbi.nlm.nih.gov/pubmed/28839237
http://dx.doi.org/10.1038/s41598-017-09313-y
work_keys_str_mv AT raminpedram asystematicmodelidentificationmethodforchemicaltransformationpathwaysthecaseofheroinbiomarkersinwastewater
AT valverdeperezborja asystematicmodelidentificationmethodforchemicaltransformationpathwaysthecaseofheroinbiomarkersinwastewater
AT poleselfabio asystematicmodelidentificationmethodforchemicaltransformationpathwaysthecaseofheroinbiomarkersinwastewater
AT locatelliluca asystematicmodelidentificationmethodforchemicaltransformationpathwaysthecaseofheroinbiomarkersinwastewater
AT ploszbenedekgy asystematicmodelidentificationmethodforchemicaltransformationpathwaysthecaseofheroinbiomarkersinwastewater
AT raminpedram systematicmodelidentificationmethodforchemicaltransformationpathwaysthecaseofheroinbiomarkersinwastewater
AT valverdeperezborja systematicmodelidentificationmethodforchemicaltransformationpathwaysthecaseofheroinbiomarkersinwastewater
AT poleselfabio systematicmodelidentificationmethodforchemicaltransformationpathwaysthecaseofheroinbiomarkersinwastewater
AT locatelliluca systematicmodelidentificationmethodforchemicaltransformationpathwaysthecaseofheroinbiomarkersinwastewater
AT ploszbenedekgy systematicmodelidentificationmethodforchemicaltransformationpathwaysthecaseofheroinbiomarkersinwastewater