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Healing X-ray scattering images

X-ray scattering images contain numerous gaps and defects arising from detector limitations and experimental configuration. We present a method to heal X-ray scattering images, filling gaps in the data and removing defects in a physically meaningful manner. Unlike generic inpainting methods, this me...

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Detalles Bibliográficos
Autores principales: Liu, Jiliang, Lhermitte, Julien, Tian, Ye, Zhang, Zheng, Yu, Dantong, Yager, Kevin G.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5571808/
https://www.ncbi.nlm.nih.gov/pubmed/28875032
http://dx.doi.org/10.1107/S2052252517006212
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author Liu, Jiliang
Lhermitte, Julien
Tian, Ye
Zhang, Zheng
Yu, Dantong
Yager, Kevin G.
author_facet Liu, Jiliang
Lhermitte, Julien
Tian, Ye
Zhang, Zheng
Yu, Dantong
Yager, Kevin G.
author_sort Liu, Jiliang
collection PubMed
description X-ray scattering images contain numerous gaps and defects arising from detector limitations and experimental configuration. We present a method to heal X-ray scattering images, filling gaps in the data and removing defects in a physically meaningful manner. Unlike generic inpainting methods, this method is closely tuned to the expected structure of reciprocal-space data. In particular, we exploit statistical tests and symmetry analysis to identify the structure of an image; we then copy, average and interpolate measured data into gaps in a way that respects the identified structure and symmetry. Importantly, the underlying analysis methods provide useful characterization of structures present in the image, including the identification of diffuse versus sharp features, anisotropy and symmetry. The presented method leverages known characteristics of reciprocal space, enabling physically reasonable reconstruction even with large image gaps. The method will correspondingly fail for images that violate these underlying assumptions. The method assumes point symmetry and is thus applicable to small-angle X-ray scattering (SAXS) data, but only to a subset of wide-angle data. Our method succeeds in filling gaps and healing defects in experimental images, including extending data beyond the original detector borders.
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spelling pubmed-55718082017-09-05 Healing X-ray scattering images Liu, Jiliang Lhermitte, Julien Tian, Ye Zhang, Zheng Yu, Dantong Yager, Kevin G. IUCrJ Research Papers X-ray scattering images contain numerous gaps and defects arising from detector limitations and experimental configuration. We present a method to heal X-ray scattering images, filling gaps in the data and removing defects in a physically meaningful manner. Unlike generic inpainting methods, this method is closely tuned to the expected structure of reciprocal-space data. In particular, we exploit statistical tests and symmetry analysis to identify the structure of an image; we then copy, average and interpolate measured data into gaps in a way that respects the identified structure and symmetry. Importantly, the underlying analysis methods provide useful characterization of structures present in the image, including the identification of diffuse versus sharp features, anisotropy and symmetry. The presented method leverages known characteristics of reciprocal space, enabling physically reasonable reconstruction even with large image gaps. The method will correspondingly fail for images that violate these underlying assumptions. The method assumes point symmetry and is thus applicable to small-angle X-ray scattering (SAXS) data, but only to a subset of wide-angle data. Our method succeeds in filling gaps and healing defects in experimental images, including extending data beyond the original detector borders. International Union of Crystallography 2017-05-24 /pmc/articles/PMC5571808/ /pubmed/28875032 http://dx.doi.org/10.1107/S2052252517006212 Text en © Jiliang Liu et al. 2017 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/2.0/uk/
spellingShingle Research Papers
Liu, Jiliang
Lhermitte, Julien
Tian, Ye
Zhang, Zheng
Yu, Dantong
Yager, Kevin G.
Healing X-ray scattering images
title Healing X-ray scattering images
title_full Healing X-ray scattering images
title_fullStr Healing X-ray scattering images
title_full_unstemmed Healing X-ray scattering images
title_short Healing X-ray scattering images
title_sort healing x-ray scattering images
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5571808/
https://www.ncbi.nlm.nih.gov/pubmed/28875032
http://dx.doi.org/10.1107/S2052252517006212
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