Cargando…

WeBCMD: A cross-platform interface for the BCMD modelling framework

Multimodal monitoring of the brain generates a great quantity of data, providing the potential for great insight into both healthy and injured cerebral dynamics. In particular, near-infrared spectroscopy can be used to measure various physiological variables of interest, such as haemoglobin oxygenat...

Descripción completa

Detalles Bibliográficos
Autores principales: Russell-Buckland, Joshua, Caldwell, Matthew, Tachtsidis, Ilias
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000Research 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5571890/
https://www.ncbi.nlm.nih.gov/pubmed/28951892
http://dx.doi.org/10.12688/wellcomeopenres.12201.1
_version_ 1783259424898416640
author Russell-Buckland, Joshua
Caldwell, Matthew
Tachtsidis, Ilias
author_facet Russell-Buckland, Joshua
Caldwell, Matthew
Tachtsidis, Ilias
author_sort Russell-Buckland, Joshua
collection PubMed
description Multimodal monitoring of the brain generates a great quantity of data, providing the potential for great insight into both healthy and injured cerebral dynamics. In particular, near-infrared spectroscopy can be used to measure various physiological variables of interest, such as haemoglobin oxygenation and the redox state of cytochrome-c-oxidase, alongside systemic signals, such as blood pressure. Interpreting these measurements is a complex endeavour, and much work has been done to develop mathematical models that can help to provide understanding of the underlying processes that contribute to the overall dynamics. BCMD is a software framework that was developed to run such models. However, obtaining, installing and running this software is no simple task. Here we present WeBCMD, an online environment that attempts to make the process simpler and much more accessible. By leveraging modern web technologies, an extensible and cross-platform package has been created that can also be accessed remotely from the cloud. WeBCMD is available as a Docker image and an online service.
format Online
Article
Text
id pubmed-5571890
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher F1000Research
record_format MEDLINE/PubMed
spelling pubmed-55718902017-09-26 WeBCMD: A cross-platform interface for the BCMD modelling framework Russell-Buckland, Joshua Caldwell, Matthew Tachtsidis, Ilias Wellcome Open Res Software Tool Article Multimodal monitoring of the brain generates a great quantity of data, providing the potential for great insight into both healthy and injured cerebral dynamics. In particular, near-infrared spectroscopy can be used to measure various physiological variables of interest, such as haemoglobin oxygenation and the redox state of cytochrome-c-oxidase, alongside systemic signals, such as blood pressure. Interpreting these measurements is a complex endeavour, and much work has been done to develop mathematical models that can help to provide understanding of the underlying processes that contribute to the overall dynamics. BCMD is a software framework that was developed to run such models. However, obtaining, installing and running this software is no simple task. Here we present WeBCMD, an online environment that attempts to make the process simpler and much more accessible. By leveraging modern web technologies, an extensible and cross-platform package has been created that can also be accessed remotely from the cloud. WeBCMD is available as a Docker image and an online service. F1000Research 2017-07-26 /pmc/articles/PMC5571890/ /pubmed/28951892 http://dx.doi.org/10.12688/wellcomeopenres.12201.1 Text en Copyright: © 2017 Russell-Buckland J et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Software Tool Article
Russell-Buckland, Joshua
Caldwell, Matthew
Tachtsidis, Ilias
WeBCMD: A cross-platform interface for the BCMD modelling framework
title WeBCMD: A cross-platform interface for the BCMD modelling framework
title_full WeBCMD: A cross-platform interface for the BCMD modelling framework
title_fullStr WeBCMD: A cross-platform interface for the BCMD modelling framework
title_full_unstemmed WeBCMD: A cross-platform interface for the BCMD modelling framework
title_short WeBCMD: A cross-platform interface for the BCMD modelling framework
title_sort webcmd: a cross-platform interface for the bcmd modelling framework
topic Software Tool Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5571890/
https://www.ncbi.nlm.nih.gov/pubmed/28951892
http://dx.doi.org/10.12688/wellcomeopenres.12201.1
work_keys_str_mv AT russellbucklandjoshua webcmdacrossplatforminterfaceforthebcmdmodellingframework
AT caldwellmatthew webcmdacrossplatforminterfaceforthebcmdmodellingframework
AT tachtsidisilias webcmdacrossplatforminterfaceforthebcmdmodellingframework