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Tensor decomposition-based unsupervised feature extraction applied to matrix products for multi-view data processing
In the current era of big data, the amount of data available is continuously increasing. Both the number and types of samples, or features, are on the rise. The mixing of distinct features often makes interpretation more difficult. However, separate analysis of individual types requires subsequent i...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Public Library of Science
2017
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5571984/ https://www.ncbi.nlm.nih.gov/pubmed/28841719 http://dx.doi.org/10.1371/journal.pone.0183933 |
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author | Taguchi, Y-h. |
author_facet | Taguchi, Y-h. |
author_sort | Taguchi, Y-h. |
collection | PubMed |
description | In the current era of big data, the amount of data available is continuously increasing. Both the number and types of samples, or features, are on the rise. The mixing of distinct features often makes interpretation more difficult. However, separate analysis of individual types requires subsequent integration. A tensor is a useful framework to deal with distinct types of features in an integrated manner without mixing them. On the other hand, tensor data is not easy to obtain since it requires the measurements of huge numbers of combinations of distinct features; if there are m kinds of features, each of which has N dimensions, the number of measurements needed are as many as N(m), which is often too large to measure. In this paper, I propose a new method where a tensor is generated from individual features without combinatorial measurements, and the generated tensor was decomposed back to matrices, by which unsupervised feature extraction was performed. In order to demonstrate the usefulness of the proposed strategy, it was applied to synthetic data, as well as three omics datasets. It outperformed other matrix-based methodologies. |
format | Online Article Text |
id | pubmed-5571984 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-55719842017-09-15 Tensor decomposition-based unsupervised feature extraction applied to matrix products for multi-view data processing Taguchi, Y-h. PLoS One Research Article In the current era of big data, the amount of data available is continuously increasing. Both the number and types of samples, or features, are on the rise. The mixing of distinct features often makes interpretation more difficult. However, separate analysis of individual types requires subsequent integration. A tensor is a useful framework to deal with distinct types of features in an integrated manner without mixing them. On the other hand, tensor data is not easy to obtain since it requires the measurements of huge numbers of combinations of distinct features; if there are m kinds of features, each of which has N dimensions, the number of measurements needed are as many as N(m), which is often too large to measure. In this paper, I propose a new method where a tensor is generated from individual features without combinatorial measurements, and the generated tensor was decomposed back to matrices, by which unsupervised feature extraction was performed. In order to demonstrate the usefulness of the proposed strategy, it was applied to synthetic data, as well as three omics datasets. It outperformed other matrix-based methodologies. Public Library of Science 2017-08-25 /pmc/articles/PMC5571984/ /pubmed/28841719 http://dx.doi.org/10.1371/journal.pone.0183933 Text en © 2017 Y-h. Taguchi http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Taguchi, Y-h. Tensor decomposition-based unsupervised feature extraction applied to matrix products for multi-view data processing |
title | Tensor decomposition-based unsupervised feature extraction applied to matrix products for multi-view data processing |
title_full | Tensor decomposition-based unsupervised feature extraction applied to matrix products for multi-view data processing |
title_fullStr | Tensor decomposition-based unsupervised feature extraction applied to matrix products for multi-view data processing |
title_full_unstemmed | Tensor decomposition-based unsupervised feature extraction applied to matrix products for multi-view data processing |
title_short | Tensor decomposition-based unsupervised feature extraction applied to matrix products for multi-view data processing |
title_sort | tensor decomposition-based unsupervised feature extraction applied to matrix products for multi-view data processing |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5571984/ https://www.ncbi.nlm.nih.gov/pubmed/28841719 http://dx.doi.org/10.1371/journal.pone.0183933 |
work_keys_str_mv | AT taguchiyh tensordecompositionbasedunsupervisedfeatureextractionappliedtomatrixproductsformultiviewdataprocessing |