Cargando…

Ribosome signatures aid bacterial translation initiation site identification

BACKGROUND: While methods for annotation of genes are increasingly reliable, the exact identification of translation initiation sites remains a challenging problem. Since the N-termini of proteins often contain regulatory and targeting information, developing a robust method for start site identific...

Descripción completa

Detalles Bibliográficos
Autores principales:	Giess, Adam, Jonckheere, Veronique, Ndah, Elvis, Chyżyńska, Katarzyna, Van Damme, Petra, Valen, Eivind
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2017
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5576327/ https://www.ncbi.nlm.nih.gov/pubmed/28854918 http://dx.doi.org/10.1186/s12915-017-0416-0

Ejemplares similares

REPARATION: ribosome profiling assisted (re-)annotation of bacterial genomes
por: Ndah, Elvis, et al.
Publicado: (2017)

eIF1 modulates the recognition of suboptimal translation initiation sites and steers gene expression via uORFs
por: Fijałkowska, Daria, et al.
Publicado: (2017)

Deep conservation of ribosome stall sites across RNA processing genes
por: Chyżyńska, Katarzyna, et al.
Publicado: (2021)

Shoelaces: an interactive tool for ribosome profiling processing and visualization
por: Birkeland, Åsmund, et al.
Publicado: (2018)

N-terminal Proteomics Assisted Profiling of the Unexplored Translation Initiation Landscape in Arabidopsis thaliana
por: Willems, Patrick, et al.
Publicado: (2017)

To New Beginnings: Riboproteogenomics Discovery of N-Terminal Proteoforms in Arabidopsis Thaliana
por: Willems, Patrick, et al.
Publicado: (2022)

ORFik: a comprehensive R toolkit for the analysis of translation
por: Tjeldnes, Håkon, et al.
Publicado: (2021)

PROTEOFORMER 2.0: Further Developments in the Ribosome Profiling-assisted Proteogenomic Hunt for New Proteoforms
por: Verbruggen, Steven, et al.
Publicado: (2019)

Positional proteomics reveals differences in N‐terminal proteoform stability
por: Gawron, Daria, et al.
Publicado: (2016)

PROTEOFORMER: deep proteome coverage through ribosome profiling and MS integration
por: Crappé, Jeroen, et al.
Publicado: (2015)

Ribosome Decision Graphs for the Representation of Eukaryotic RNA Translation Complexity
por: Tierney, Jack A. S., et al.
Publicado: (2023)

Translation initiation in bacterial polysomes through ribosome loading on a standby site on a highly translated mRNA
por: Andreeva, Irena, et al.
Publicado: (2018)

Ribosome profiling in archaea reveals leaderless translation, novel translational initiation sites, and ribosome pausing at single codon resolution
por: Gelsinger, Diego Rivera, et al.
Publicado: (2020)

N-Terminal Acetyltransferase Naa40p Whereabouts Put into N-Terminal Proteoform Perspective
por: Jonckheere, Veronique, et al.
Publicado: (2021)

Translation initiation site of mRNA is selected through dynamic interaction with the ribosome
por: Chen, Yi-Lan, et al.
Publicado: (2022)

Selective translation by alternative bacterial ribosomes
por: Chen, Yu-Xiang, et al.
Publicado: (2020)

Giardiavirus Internal Ribosome Entry Site Has an Apparently Unique Mechanism of Initiating Translation
por: Garlapati, Srinivas, et al.
Publicado: (2009)

Structural signatures of antibiotic binding sites on the ribosome
por: David-Eden, Hilda, et al.
Publicado: (2010)

Initiation of Quality Control during Poly(A) Translation Requires Site-Specific Ribosome Ubiquitination
por: Juszkiewicz, Szymon, et al.
Publicado: (2017)

Proteogenomics in Aid of Host–Pathogen Interaction Studies: A Bacterial Perspective
por: Fels, Ursula, et al.
Publicado: (2017)

The context of the ribosome binding site in mRNAs defines specificity of action of kasugamycin, an inhibitor of translation initiation
por: Zhang, Yan, et al.
Publicado: (2022)

Gene regulation: translational initiation by internal ribosome binding
por: Oh, Soo-Kyung, et al.
Publicado: (1993)

Viral strategies of translation initiation: Ribosomal shunt and reinitiation
por: Ryabova, Lyubov A, et al.
Publicado: (2002)

Relaxed initiation pausing of ribosomes drives oncogenic translation
por: Dong, Leiming, et al.
Publicado: (2021)

Systematic Clustering of Transcription Start Site Landscapes
por: Zhao, Xiaobei, et al.
Publicado: (2011)

Occlusion of the Ribosome Binding Site Connects the Translational Initiation Frequency, mRNA Stability and Premature Transcription Termination
por: Eriksen, Mette, et al.
Publicado: (2017)

Inferring efficiency of translation initiation and elongation from ribosome profiling
por: Szavits-Nossan, Juraj, et al.
Publicado: (2020)

Ribosome heterogeneity: another level of complexity in bacterial translation regulation
por: Byrgazov, Konstantin, et al.
Publicado: (2013)

Ribosome reinitiation at leader peptides increases translation of bacterial proteins
por: Korolev, Semen A., et al.
Publicado: (2016)

Activation of GCN2 kinase by ribosome stalling links translation elongation with translation initiation
por: Ishimura, Ryuta, et al.
Publicado: (2016)

Hidden in plain sight: challenges in proteomics detection of small ORF-encoded polypeptides
por: Fijalkowski, Igor, et al.
Publicado: (2022)

The antibiotic Furvina® targets the P-site of 30S ribosomal subunits and inhibits translation initiation displaying start codon bias
por: Fabbretti, Attilio, et al.
Publicado: (2012)

EttA regulates translation by binding to the ribosomal E site and restricting ribosome-tRNA dynamics
por: Chen, Bo, et al.
Publicado: (2014)

Comprehensive identification of translation start sites by tetracycline-inhibited ribosome profiling
por: Nakahigashi, Kenji, et al.
Publicado: (2016)

Transcriptome-wide sites of collided ribosomes reveal principles of translational pausing
por: Arpat, Alaaddin Bulak, et al.
Publicado: (2020)

Ribosome collisions trigger cis-acting feedback inhibition of translation initiation
por: Juszkiewicz, Szymon, et al.
Publicado: (2020)

How the initiating ribosome copes with ppGpp to translate mRNAs
por: Vinogradova, Daria S., et al.
Publicado: (2020)

Understanding Biases in Ribosome Profiling Experiments Reveals Signatures of Translation Dynamics in Yeast
por: Hussmann, Jeffrey A., et al.
Publicado: (2015)

Ornithine capture by a translating ribosome controls bacterial polyamine synthesis
por: del Valle, Alba Herrero, et al.
Publicado: (2020)

Membrane-bound ribosomes of myeloma cells. VI. Initiation of immunoglobulin mRNA translation occurs on free ribosomes
Publicado: (1981)

Cannot write session to /tmp/vufind_sessions/sess_mf0igtvqdjtf614f28kd1hviqe