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Comparative Genomic In Situ Hybridization and the Possible Role of Retroelements in the Karyotypic Evolution of Three Akodontini Species

South American Akodontini rodents are characterized by a large number of chromosome rearrangements. Among them, the genus Akodon has been extensively analyzed with classical and molecular cytogenetics, which allowed the identification of a large number of intra- and interspecific chromosomal variati...

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Autores principales: Araújo, Naiara Pereira, Kuhn, Gustavo Campos Silva, Vieira, Flávia Nunes, Morcatty, Thaís Queiroz, Paglia, Adriano Pereira, Svartman, Marta
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5576401/
https://www.ncbi.nlm.nih.gov/pubmed/28900618
http://dx.doi.org/10.1155/2017/5935380
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author Araújo, Naiara Pereira
Kuhn, Gustavo Campos Silva
Vieira, Flávia Nunes
Morcatty, Thaís Queiroz
Paglia, Adriano Pereira
Svartman, Marta
author_facet Araújo, Naiara Pereira
Kuhn, Gustavo Campos Silva
Vieira, Flávia Nunes
Morcatty, Thaís Queiroz
Paglia, Adriano Pereira
Svartman, Marta
author_sort Araújo, Naiara Pereira
collection PubMed
description South American Akodontini rodents are characterized by a large number of chromosome rearrangements. Among them, the genus Akodon has been extensively analyzed with classical and molecular cytogenetics, which allowed the identification of a large number of intra- and interspecific chromosomal variation due to Robertsonian rearrangements, pericentric inversions, and heterochromatin additions/deletions. In order to shed some light on the cause of these rearrangements, we comparatively analyzed the karyotypes of three Akodontini species, Akodon cursor (2n = 14, FN = 19), A. montensis (2n = 24, FN = 42), and Necromys lasiurus (2n = 34, FN = 34), after GTG- and CBG-banding. The karyotypes differed by Robertsonian rearrangements, pericentric inversions, centromere repositioning, and heterochromatin variation. Genome comparisons were performed through interspecific fluorescent in situ hybridization (FISH) with total genomic DNAs of each species as probes (GISH). Our results revealed considerable conservation of the euchromatic portions among the three karyotypes suggesting that they mostly differ in their heterochromatic regions. FISH was also performed to assess the distribution of telomeric sequences, long and short interspersed repetitive elements (LINE-1 and B1 SINE) and of the endogenous retrovirus mysTR in the genomes of the three species. The results led us to infer that transposable elements have played an important role in the enormous chromosome variation found in Akodontini.
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spelling pubmed-55764012017-09-12 Comparative Genomic In Situ Hybridization and the Possible Role of Retroelements in the Karyotypic Evolution of Three Akodontini Species Araújo, Naiara Pereira Kuhn, Gustavo Campos Silva Vieira, Flávia Nunes Morcatty, Thaís Queiroz Paglia, Adriano Pereira Svartman, Marta Int J Genomics Research Article South American Akodontini rodents are characterized by a large number of chromosome rearrangements. Among them, the genus Akodon has been extensively analyzed with classical and molecular cytogenetics, which allowed the identification of a large number of intra- and interspecific chromosomal variation due to Robertsonian rearrangements, pericentric inversions, and heterochromatin additions/deletions. In order to shed some light on the cause of these rearrangements, we comparatively analyzed the karyotypes of three Akodontini species, Akodon cursor (2n = 14, FN = 19), A. montensis (2n = 24, FN = 42), and Necromys lasiurus (2n = 34, FN = 34), after GTG- and CBG-banding. The karyotypes differed by Robertsonian rearrangements, pericentric inversions, centromere repositioning, and heterochromatin variation. Genome comparisons were performed through interspecific fluorescent in situ hybridization (FISH) with total genomic DNAs of each species as probes (GISH). Our results revealed considerable conservation of the euchromatic portions among the three karyotypes suggesting that they mostly differ in their heterochromatic regions. FISH was also performed to assess the distribution of telomeric sequences, long and short interspersed repetitive elements (LINE-1 and B1 SINE) and of the endogenous retrovirus mysTR in the genomes of the three species. The results led us to infer that transposable elements have played an important role in the enormous chromosome variation found in Akodontini. Hindawi 2017 2017-08-15 /pmc/articles/PMC5576401/ /pubmed/28900618 http://dx.doi.org/10.1155/2017/5935380 Text en Copyright © 2017 Naiara Pereira Araújo et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Araújo, Naiara Pereira
Kuhn, Gustavo Campos Silva
Vieira, Flávia Nunes
Morcatty, Thaís Queiroz
Paglia, Adriano Pereira
Svartman, Marta
Comparative Genomic In Situ Hybridization and the Possible Role of Retroelements in the Karyotypic Evolution of Three Akodontini Species
title Comparative Genomic In Situ Hybridization and the Possible Role of Retroelements in the Karyotypic Evolution of Three Akodontini Species
title_full Comparative Genomic In Situ Hybridization and the Possible Role of Retroelements in the Karyotypic Evolution of Three Akodontini Species
title_fullStr Comparative Genomic In Situ Hybridization and the Possible Role of Retroelements in the Karyotypic Evolution of Three Akodontini Species
title_full_unstemmed Comparative Genomic In Situ Hybridization and the Possible Role of Retroelements in the Karyotypic Evolution of Three Akodontini Species
title_short Comparative Genomic In Situ Hybridization and the Possible Role of Retroelements in the Karyotypic Evolution of Three Akodontini Species
title_sort comparative genomic in situ hybridization and the possible role of retroelements in the karyotypic evolution of three akodontini species
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5576401/
https://www.ncbi.nlm.nih.gov/pubmed/28900618
http://dx.doi.org/10.1155/2017/5935380
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