Cargando…

Identification of Novel Clinically Relevant Variants in 70 Southern Chinese patients with Thoracic Aortic Aneurysm and Dissection by Next-generation Sequencing

Thoracic Aortic Aneurysm and Dissection (TAAD) is a life-threatening pathology and remains challenging worldwide. Up to 40% of TAAD are hereditary with complex heterogeneous genetic backgrounds. Recently, next-generation sequencing (NGS) has been successfully applied to identify genetic variants in...

Descripción completa

Detalles Bibliográficos
Autores principales: Fang, Miaoxian, Yu, Changjiang, Chen, Siyao, Xiong, Weiping, Li, Xin, Zeng, Rong, Zhuang, Jian, Fan, Ruixin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5577253/
https://www.ncbi.nlm.nih.gov/pubmed/28855619
http://dx.doi.org/10.1038/s41598-017-09785-y
_version_ 1783260320718913536
author Fang, Miaoxian
Yu, Changjiang
Chen, Siyao
Xiong, Weiping
Li, Xin
Zeng, Rong
Zhuang, Jian
Fan, Ruixin
author_facet Fang, Miaoxian
Yu, Changjiang
Chen, Siyao
Xiong, Weiping
Li, Xin
Zeng, Rong
Zhuang, Jian
Fan, Ruixin
author_sort Fang, Miaoxian
collection PubMed
description Thoracic Aortic Aneurysm and Dissection (TAAD) is a life-threatening pathology and remains challenging worldwide. Up to 40% of TAAD are hereditary with complex heterogeneous genetic backgrounds. Recently, next-generation sequencing (NGS) has been successfully applied to identify genetic variants in an efficient and cost-effective manner. In our study, NGS coupled with DNA target-capture array was used to screen 11 known causative genes of TAAD in 70 patients from Southern China. All the identified variants were confirmed by Sanger sequencing. We identified forty variants in 36 patients (51.4%), including three known pathogenic (7.5%), 10 likely pathogenic variants (25%, 9 in FBN1, 1 in ACTA2), and 27 variants with uncertain significance (VUS) (67.5%). Among the 27 VUS, 14 (51.9%) were in the FBN1 gene, 3 in Col5A2, 2 in ACTA2, 2 in MYH11, 2 in MYLK, 2 in SLC2A10, 1 in MSTN and 1 in SMAD3 respectively. Based on the segregation data and independent reports, five known likely pathogenic variants and four VUS were upgraded to pathogenic variant and likely pathogenic variant respectively. Our data indicate that NGS is a highly efficient genetic method for identification of pathogenic variants in TAAD patients.
format Online
Article
Text
id pubmed-5577253
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-55772532017-09-01 Identification of Novel Clinically Relevant Variants in 70 Southern Chinese patients with Thoracic Aortic Aneurysm and Dissection by Next-generation Sequencing Fang, Miaoxian Yu, Changjiang Chen, Siyao Xiong, Weiping Li, Xin Zeng, Rong Zhuang, Jian Fan, Ruixin Sci Rep Article Thoracic Aortic Aneurysm and Dissection (TAAD) is a life-threatening pathology and remains challenging worldwide. Up to 40% of TAAD are hereditary with complex heterogeneous genetic backgrounds. Recently, next-generation sequencing (NGS) has been successfully applied to identify genetic variants in an efficient and cost-effective manner. In our study, NGS coupled with DNA target-capture array was used to screen 11 known causative genes of TAAD in 70 patients from Southern China. All the identified variants were confirmed by Sanger sequencing. We identified forty variants in 36 patients (51.4%), including three known pathogenic (7.5%), 10 likely pathogenic variants (25%, 9 in FBN1, 1 in ACTA2), and 27 variants with uncertain significance (VUS) (67.5%). Among the 27 VUS, 14 (51.9%) were in the FBN1 gene, 3 in Col5A2, 2 in ACTA2, 2 in MYH11, 2 in MYLK, 2 in SLC2A10, 1 in MSTN and 1 in SMAD3 respectively. Based on the segregation data and independent reports, five known likely pathogenic variants and four VUS were upgraded to pathogenic variant and likely pathogenic variant respectively. Our data indicate that NGS is a highly efficient genetic method for identification of pathogenic variants in TAAD patients. Nature Publishing Group UK 2017-08-30 /pmc/articles/PMC5577253/ /pubmed/28855619 http://dx.doi.org/10.1038/s41598-017-09785-y Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Fang, Miaoxian
Yu, Changjiang
Chen, Siyao
Xiong, Weiping
Li, Xin
Zeng, Rong
Zhuang, Jian
Fan, Ruixin
Identification of Novel Clinically Relevant Variants in 70 Southern Chinese patients with Thoracic Aortic Aneurysm and Dissection by Next-generation Sequencing
title Identification of Novel Clinically Relevant Variants in 70 Southern Chinese patients with Thoracic Aortic Aneurysm and Dissection by Next-generation Sequencing
title_full Identification of Novel Clinically Relevant Variants in 70 Southern Chinese patients with Thoracic Aortic Aneurysm and Dissection by Next-generation Sequencing
title_fullStr Identification of Novel Clinically Relevant Variants in 70 Southern Chinese patients with Thoracic Aortic Aneurysm and Dissection by Next-generation Sequencing
title_full_unstemmed Identification of Novel Clinically Relevant Variants in 70 Southern Chinese patients with Thoracic Aortic Aneurysm and Dissection by Next-generation Sequencing
title_short Identification of Novel Clinically Relevant Variants in 70 Southern Chinese patients with Thoracic Aortic Aneurysm and Dissection by Next-generation Sequencing
title_sort identification of novel clinically relevant variants in 70 southern chinese patients with thoracic aortic aneurysm and dissection by next-generation sequencing
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5577253/
https://www.ncbi.nlm.nih.gov/pubmed/28855619
http://dx.doi.org/10.1038/s41598-017-09785-y
work_keys_str_mv AT fangmiaoxian identificationofnovelclinicallyrelevantvariantsin70southernchinesepatientswiththoracicaorticaneurysmanddissectionbynextgenerationsequencing
AT yuchangjiang identificationofnovelclinicallyrelevantvariantsin70southernchinesepatientswiththoracicaorticaneurysmanddissectionbynextgenerationsequencing
AT chensiyao identificationofnovelclinicallyrelevantvariantsin70southernchinesepatientswiththoracicaorticaneurysmanddissectionbynextgenerationsequencing
AT xiongweiping identificationofnovelclinicallyrelevantvariantsin70southernchinesepatientswiththoracicaorticaneurysmanddissectionbynextgenerationsequencing
AT lixin identificationofnovelclinicallyrelevantvariantsin70southernchinesepatientswiththoracicaorticaneurysmanddissectionbynextgenerationsequencing
AT zengrong identificationofnovelclinicallyrelevantvariantsin70southernchinesepatientswiththoracicaorticaneurysmanddissectionbynextgenerationsequencing
AT zhuangjian identificationofnovelclinicallyrelevantvariantsin70southernchinesepatientswiththoracicaorticaneurysmanddissectionbynextgenerationsequencing
AT fanruixin identificationofnovelclinicallyrelevantvariantsin70southernchinesepatientswiththoracicaorticaneurysmanddissectionbynextgenerationsequencing