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CASAS: Cancer Survival Analysis Suite, a web based application
We present CASAS, a shiny R based tool for interactive survival analysis and visualization of results. The tool provides a web-based one stop shop to perform the following types of survival analysis: quantile, landmark and competing risks, in addition to standard survival analysis. The interface m...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
F1000Research
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5580407/ https://www.ncbi.nlm.nih.gov/pubmed/28928946 http://dx.doi.org/10.12688/f1000research.11830.2 |
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author | Rupji, Manali Zhang, Xinyan Kowalski, Jeanne |
author_facet | Rupji, Manali Zhang, Xinyan Kowalski, Jeanne |
author_sort | Rupji, Manali |
collection | PubMed |
description | We present CASAS, a shiny R based tool for interactive survival analysis and visualization of results. The tool provides a web-based one stop shop to perform the following types of survival analysis: quantile, landmark and competing risks, in addition to standard survival analysis. The interface makes it easy to perform such survival analyses and obtain results using the interactive Kaplan-Meier and cumulative incidence plots. Univariate analysis can be performed on one or several user specified variable(s) simultaneously, the results of which are displayed in a single table that includes log rank p-values and hazard ratios along with their significance. For several quantile survival analyses from multiple cancer types, a single summary grid is constructed. The CASAS package has been implemented in R and is available via http://shinygispa.winship.emory.edu/CASAS/. The developmental repository is available at https://github.com/manalirupji/CASAS/. |
format | Online Article Text |
id | pubmed-5580407 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | F1000Research |
record_format | MEDLINE/PubMed |
spelling | pubmed-55804072017-09-18 CASAS: Cancer Survival Analysis Suite, a web based application Rupji, Manali Zhang, Xinyan Kowalski, Jeanne F1000Res Software Tool Article We present CASAS, a shiny R based tool for interactive survival analysis and visualization of results. The tool provides a web-based one stop shop to perform the following types of survival analysis: quantile, landmark and competing risks, in addition to standard survival analysis. The interface makes it easy to perform such survival analyses and obtain results using the interactive Kaplan-Meier and cumulative incidence plots. Univariate analysis can be performed on one or several user specified variable(s) simultaneously, the results of which are displayed in a single table that includes log rank p-values and hazard ratios along with their significance. For several quantile survival analyses from multiple cancer types, a single summary grid is constructed. The CASAS package has been implemented in R and is available via http://shinygispa.winship.emory.edu/CASAS/. The developmental repository is available at https://github.com/manalirupji/CASAS/. F1000Research 2017-07-31 /pmc/articles/PMC5580407/ /pubmed/28928946 http://dx.doi.org/10.12688/f1000research.11830.2 Text en Copyright: © 2017 Rupji M et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Software Tool Article Rupji, Manali Zhang, Xinyan Kowalski, Jeanne CASAS: Cancer Survival Analysis Suite, a web based application |
title | CASAS: Cancer Survival Analysis Suite, a web based application |
title_full | CASAS: Cancer Survival Analysis Suite, a web based application |
title_fullStr | CASAS: Cancer Survival Analysis Suite, a web based application |
title_full_unstemmed | CASAS: Cancer Survival Analysis Suite, a web based application |
title_short | CASAS: Cancer Survival Analysis Suite, a web based application |
title_sort | casas: cancer survival analysis suite, a web based application |
topic | Software Tool Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5580407/ https://www.ncbi.nlm.nih.gov/pubmed/28928946 http://dx.doi.org/10.12688/f1000research.11830.2 |
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