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Identification and characterization of microsatellite loci in the tuliptree, Liriodendron tulipifera (Magnoliaceae)(1)
PREMISE OF THE STUDY: Twenty-three polymorphic microsatellite loci (simple sequence repeats) were identified and characterized for Liriodendron tulipifera (Magnoliaceae), a species native to eastern North America, to investigate its genetic diversity, population structure, and mating system. METHODS...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5584817/ https://www.ncbi.nlm.nih.gov/pubmed/28924513 http://dx.doi.org/10.3732/apps.1700032 |
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author | Gutiérrez-Ozuna, Ricardo Hamilton, Matthew B. |
author_facet | Gutiérrez-Ozuna, Ricardo Hamilton, Matthew B. |
author_sort | Gutiérrez-Ozuna, Ricardo |
collection | PubMed |
description | PREMISE OF THE STUDY: Twenty-three polymorphic microsatellite loci (simple sequence repeats) were identified and characterized for Liriodendron tulipifera (Magnoliaceae), a species native to eastern North America, to investigate its genetic diversity, population structure, and mating system. METHODS AND RESULTS: Using Illumina HiSeq paired-end reads from genomic DNA, searches for repeat motifs identified approximately 280,000 potentially amplifiable loci. Of 77 loci tested, 51 amplified consistently. When genotyped using 30 to 52 total adult trees from three old-growth populations in Maryland, Virginia, and New Jersey, USA, 23 loci were polymorphic. These loci exhibited four to 13 alleles, and observed and expected heterozygosities ranged from 0.233 to 0.865 and 0.272 to 0.876, respectively. CONCLUSIONS: The microsatellite marker loci presented here will be valuable in population genetic studies of L. tulipifera because they do not suffer from ascertainment bias and show high polymorphism. |
format | Online Article Text |
id | pubmed-5584817 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-55848172017-09-18 Identification and characterization of microsatellite loci in the tuliptree, Liriodendron tulipifera (Magnoliaceae)(1) Gutiérrez-Ozuna, Ricardo Hamilton, Matthew B. Appl Plant Sci Primer Note PREMISE OF THE STUDY: Twenty-three polymorphic microsatellite loci (simple sequence repeats) were identified and characterized for Liriodendron tulipifera (Magnoliaceae), a species native to eastern North America, to investigate its genetic diversity, population structure, and mating system. METHODS AND RESULTS: Using Illumina HiSeq paired-end reads from genomic DNA, searches for repeat motifs identified approximately 280,000 potentially amplifiable loci. Of 77 loci tested, 51 amplified consistently. When genotyped using 30 to 52 total adult trees from three old-growth populations in Maryland, Virginia, and New Jersey, USA, 23 loci were polymorphic. These loci exhibited four to 13 alleles, and observed and expected heterozygosities ranged from 0.233 to 0.865 and 0.272 to 0.876, respectively. CONCLUSIONS: The microsatellite marker loci presented here will be valuable in population genetic studies of L. tulipifera because they do not suffer from ascertainment bias and show high polymorphism. Botanical Society of America 2017-08-24 /pmc/articles/PMC5584817/ /pubmed/28924513 http://dx.doi.org/10.3732/apps.1700032 Text en © 2017 Gutiérrez-Ozuna and Hamilton. Published by the Botanical Society of America https://creativecommons.org/licenses/by-nc-sa/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (CC-BY-NC-SA 4.0 (https://creativecommons.org/licenses/by-nc-sa/4.0/) ), which permits unrestricted noncommercial use and redistribution provided that the original author and source are credited and the new work is distributed under the same license as the original. |
spellingShingle | Primer Note Gutiérrez-Ozuna, Ricardo Hamilton, Matthew B. Identification and characterization of microsatellite loci in the tuliptree, Liriodendron tulipifera (Magnoliaceae)(1) |
title | Identification and characterization of microsatellite loci in the tuliptree, Liriodendron tulipifera (Magnoliaceae)(1) |
title_full | Identification and characterization of microsatellite loci in the tuliptree, Liriodendron tulipifera (Magnoliaceae)(1) |
title_fullStr | Identification and characterization of microsatellite loci in the tuliptree, Liriodendron tulipifera (Magnoliaceae)(1) |
title_full_unstemmed | Identification and characterization of microsatellite loci in the tuliptree, Liriodendron tulipifera (Magnoliaceae)(1) |
title_short | Identification and characterization of microsatellite loci in the tuliptree, Liriodendron tulipifera (Magnoliaceae)(1) |
title_sort | identification and characterization of microsatellite loci in the tuliptree, liriodendron tulipifera (magnoliaceae)(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5584817/ https://www.ncbi.nlm.nih.gov/pubmed/28924513 http://dx.doi.org/10.3732/apps.1700032 |
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