Cargando…

Emergence of native peptide sequences in prebiotic replication networks

Biopolymer syntheses in living cells are perfected by an elaborate error correction machinery, which was not applicable during polymerization on early Earth. Scientists are consequently striving to identify mechanisms by which functional polymers were selected and further amplified from complex preb...

Descripción completa

Detalles Bibliográficos
Autores principales: Nanda, Jayanta, Rubinov, Boris, Ivnitski, Denis, Mukherjee, Rakesh, Shtelman, Elina, Motro, Yair, Miller, Yifat, Wagner, Nathaniel, Cohen-Luria, Rivka, Ashkenasy, Gonen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5585222/
https://www.ncbi.nlm.nih.gov/pubmed/28874657
http://dx.doi.org/10.1038/s41467-017-00463-1
_version_ 1783261576354070528
author Nanda, Jayanta
Rubinov, Boris
Ivnitski, Denis
Mukherjee, Rakesh
Shtelman, Elina
Motro, Yair
Miller, Yifat
Wagner, Nathaniel
Cohen-Luria, Rivka
Ashkenasy, Gonen
author_facet Nanda, Jayanta
Rubinov, Boris
Ivnitski, Denis
Mukherjee, Rakesh
Shtelman, Elina
Motro, Yair
Miller, Yifat
Wagner, Nathaniel
Cohen-Luria, Rivka
Ashkenasy, Gonen
author_sort Nanda, Jayanta
collection PubMed
description Biopolymer syntheses in living cells are perfected by an elaborate error correction machinery, which was not applicable during polymerization on early Earth. Scientists are consequently striving to identify mechanisms by which functional polymers were selected and further amplified from complex prebiotic mixtures. Here we show the instrumental role of non-enzymatic replication in the enrichment of certain product(s). To this end, we analyzed a complex web of reactions in β-sheet peptide networks, focusing on the formation of specific intermediate compounds and template-assisted replication. Remarkably, we find that the formation of several products in a mixture is not critically harmful, since efficient and selective template-assisted reactions serve as a backbone correction mechanism, namely, for keeping the concentration of the peptide containing the native backbone equal to, or even higher than, the concentrations of the other products. We suggest that these findings may shed light on molecular evolution processes that led to current biology.
format Online
Article
Text
id pubmed-5585222
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-55852222017-09-07 Emergence of native peptide sequences in prebiotic replication networks Nanda, Jayanta Rubinov, Boris Ivnitski, Denis Mukherjee, Rakesh Shtelman, Elina Motro, Yair Miller, Yifat Wagner, Nathaniel Cohen-Luria, Rivka Ashkenasy, Gonen Nat Commun Article Biopolymer syntheses in living cells are perfected by an elaborate error correction machinery, which was not applicable during polymerization on early Earth. Scientists are consequently striving to identify mechanisms by which functional polymers were selected and further amplified from complex prebiotic mixtures. Here we show the instrumental role of non-enzymatic replication in the enrichment of certain product(s). To this end, we analyzed a complex web of reactions in β-sheet peptide networks, focusing on the formation of specific intermediate compounds and template-assisted replication. Remarkably, we find that the formation of several products in a mixture is not critically harmful, since efficient and selective template-assisted reactions serve as a backbone correction mechanism, namely, for keeping the concentration of the peptide containing the native backbone equal to, or even higher than, the concentrations of the other products. We suggest that these findings may shed light on molecular evolution processes that led to current biology. Nature Publishing Group UK 2017-09-05 /pmc/articles/PMC5585222/ /pubmed/28874657 http://dx.doi.org/10.1038/s41467-017-00463-1 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Nanda, Jayanta
Rubinov, Boris
Ivnitski, Denis
Mukherjee, Rakesh
Shtelman, Elina
Motro, Yair
Miller, Yifat
Wagner, Nathaniel
Cohen-Luria, Rivka
Ashkenasy, Gonen
Emergence of native peptide sequences in prebiotic replication networks
title Emergence of native peptide sequences in prebiotic replication networks
title_full Emergence of native peptide sequences in prebiotic replication networks
title_fullStr Emergence of native peptide sequences in prebiotic replication networks
title_full_unstemmed Emergence of native peptide sequences in prebiotic replication networks
title_short Emergence of native peptide sequences in prebiotic replication networks
title_sort emergence of native peptide sequences in prebiotic replication networks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5585222/
https://www.ncbi.nlm.nih.gov/pubmed/28874657
http://dx.doi.org/10.1038/s41467-017-00463-1
work_keys_str_mv AT nandajayanta emergenceofnativepeptidesequencesinprebioticreplicationnetworks
AT rubinovboris emergenceofnativepeptidesequencesinprebioticreplicationnetworks
AT ivnitskidenis emergenceofnativepeptidesequencesinprebioticreplicationnetworks
AT mukherjeerakesh emergenceofnativepeptidesequencesinprebioticreplicationnetworks
AT shtelmanelina emergenceofnativepeptidesequencesinprebioticreplicationnetworks
AT motroyair emergenceofnativepeptidesequencesinprebioticreplicationnetworks
AT milleryifat emergenceofnativepeptidesequencesinprebioticreplicationnetworks
AT wagnernathaniel emergenceofnativepeptidesequencesinprebioticreplicationnetworks
AT cohenluriarivka emergenceofnativepeptidesequencesinprebioticreplicationnetworks
AT ashkenasygonen emergenceofnativepeptidesequencesinprebioticreplicationnetworks