Cargando…

pGlyco 2.0 enables precision N-glycoproteomics with comprehensive quality control and one-step mass spectrometry for intact glycopeptide identification

The precise and large-scale identification of intact glycopeptides is a critical step in glycoproteomics. Owing to the complexity of glycosylation, the current overall throughput, data quality and accessibility of intact glycopeptide identification lack behind those in routine proteomic analyses. He...

Descripción completa

Detalles Bibliográficos
Autores principales:	Liu, Ming-Qi, Zeng, Wen-Feng, Fang, Pan, Cao, Wei-Qian, Liu, Chao, Yan, Guo-Quan, Zhang, Yang, Peng, Chao, Wu, Jian-Qiang, Zhang, Xiao-Jin, Tu, Hui-Jun, Chi, Hao, Sun, Rui-Xiang, Cao, Yong, Dong, Meng-Qiu, Jiang, Bi-Yun, Huang, Jiang-Ming, Shen, Hua-Li, Wong, Catherine C. L., He, Si-Min, Yang, Peng-Yuan
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2017
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5585273/ https://www.ncbi.nlm.nih.gov/pubmed/28874712 http://dx.doi.org/10.1038/s41467-017-00535-2

Ejemplares similares

Precise, fast and comprehensive analysis of intact glycopeptides and modified glycans with pGlyco3
por: Zeng, Wen-Feng, et al.
Publicado: (2021)

pGlyco: a pipeline for the identification of intact N-glycopeptides by using HCD- and CID-MS/MS and MS3
por: Zeng, Wen-Feng, et al.
Publicado: (2016)

pGlycoQuant with a deep residual network for quantitative glycoproteomics at intact glycopeptide level
por: Kong, Siyuan, et al.
Publicado: (2022)

Recent trends in glycoproteomics by characterization of intact glycopeptides
por: Piovesana, Susy, et al.
Publicado: (2023)

Glycoproteomics of the Extracellular Matrix: A Method for Intact Glycopeptide Analysis Using Mass Spectrometry
por: Barallobre-Barreiro, Javier, et al.
Publicado: (2017)

Glycopeptide database search and de novo sequencing with PEAKS GlycanFinder enable highly sensitive glycoproteomics
por: Sun, Weiping, et al.
Publicado: (2023)

Recent Advances in Software Tools for More Generic and Precise Intact Glycopeptide Analysis
por: Cao, Weiqian, et al.
Publicado: (2021)

New Glycoproteomics Software, GlycoPep Evaluator, Generates Decoy Glycopeptides de Novo and Enables Accurate False Discovery Rate Analysis for Small Data Sets
por: Zhu, Zhikai, et al.
Publicado: (2014)

Fast and Comprehensive N- and O-glycoproteomics analysis with MSFragger-Glyco
por: Polasky, Daniel A., et al.
Publicado: (2020)

Characterization of core fucosylation via sequential enzymatic treatments of intact glycopeptides and mass spectrometry analysis
por: Cao, Liwei, et al.
Publicado: (2022)

Glycoproteomics-Compatible MS/MS-Based Quantification of Glycopeptide Isomers
por: Maliepaard, Joshua C.L., et al.
Publicado: (2023)

Quantification of Intact O-Glycopeptides on Haptoglobin in Sera of Patients With Hepatocellular Carcinoma and Liver Cirrhosis
por: Shu, Hong, et al.
Publicado: (2021)

High-throughput site-specific N-glycoproteomics reveals glyco-signatures for liver disease diagnosis
por: Sun, Zhenyu, et al.
Publicado: (2022)

Mapping the O‐glycoproteome using site‐specific extraction of O‐linked glycopeptides (EXoO)
por: Yang, Weiming, et al.
Publicado: (2018)

Semiautomated glycoproteomics data analysis workflow for maximized glycopeptide identification and reliable quantification
por: Lippold, Steffen, et al.
Publicado: (2020)

Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis
por: Kawahara, Rebeca, et al.
Publicado: (2021)

Integrative Proteomics and N-Glycoproteomics Analyses of Rheumatoid Arthritis Synovium Reveal Immune-Associated Glycopeptides
por: Xu, Zhiqiang, et al.
Publicado: (2023)

Identifying intact N-glycopeptides from tandem mass spectrometry data using StrucGP
por: Shen, Jiechen, et al.
Publicado: (2022)

Selective reaction monitoring approach using structure-defined synthetic glycopeptides for validating glycopeptide biomarkers pre-determined by bottom-up glycoproteomics
por: Shiratori, Kouta, et al.
Publicado: (2022)

Integrated GlycoProteome Analyzer (I-GPA) for Automated Identification and Quantitation of Site-Specific N-Glycosylation
por: Park, Gun Wook, et al.
Publicado: (2016)

Extensive heterogeneity of glycopeptides in plasma revealed by deep glycoproteomic analysis using size-exclusion chromatography
por: Saraswat, Mayank, et al.
Publicado: (2021)

TMT-Based Multiplexed Quantitation of N-Glycopeptides Reveals Glycoproteome Remodeling Induced by Oncogenic Mutations
por: Saraswat, Mayank, et al.
Publicado: (2022)

Mass spectrometry-based N-glycoproteomics for cancer biomarker discovery
por: Zhang, Ying, et al.
Publicado: (2014)

Author Correction: Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis
por: Kawahara, Rebeca, et al.
Publicado: (2021)

GproDIA enables data-independent acquisition glycoproteomics with comprehensive statistical control
por: Yang, Yi, et al.
Publicado: (2021)

Mass Spectrometry-Based Glycoproteomics and Prostate Cancer
por: Gabriele, Caterina, et al.
Publicado: (2021)

Identification of Sialic Acid Linkages on Intact Glycopeptides via Differential Chemical Modification Using IntactGIG-HILIC
por: Yang, Shuang, et al.
Publicado: (2018)

Large-scale intact glycopeptide identification by Mascot database search
por: Bollineni, Ravi Chand, et al.
Publicado: (2018)

GlycoMine(struct): a new bioinformatics tool for highly accurate mapping of the human N-linked and O-linked glycoproteomes by incorporating structural features
por: Li, Fuyi, et al.
Publicado: (2016)

One-Step Enrichment of Intact Glycopeptides From Glycoengineered Chinese Hamster Ovary Cells
por: Yang, Ganglong, et al.
Publicado: (2020)

The Art of Destruction: Optimizing Collision Energies in Quadrupole-Time of Flight (Q-TOF) Instruments for Glycopeptide-Based Glycoproteomics
por: Hinneburg, Hannes, et al.
Publicado: (2016)

Intact glycopeptides identified by LC-MS/MS as biomarkers for response to chemotherapy of locally advanced cervical cancer
por: Li, Jing, et al.
Publicado: (2023)

Lysosomal Targeting Enhancement by Conjugation of Glycopeptides Containing Mannose-6-phosphate Glycans Derived from Glyco-engineered Yeast
por: Kang, Ji-Yeon, et al.
Publicado: (2018)

GlycoHybridSeq: Automated Identification of N-Linked Glycopeptides Using Electron Transfer/High-Energy Collision Dissociation (EThcD)
por: Zhang, Rui, et al.
Publicado: (2021)

The Role of Clinical Glyco(proteo)mics in Precision Medicine
por: van der Burgt, Yuri, et al.
Publicado: (2023)

Advanced assessment through intact glycopeptide analysis of Infliximab’s biologics and biosimilar
por: Kim, Hyejin, et al.
Publicado: (2022)

Precision N-Glycoproteomic Profiling of Murine Peritoneal Macrophages After Different Stimulations
por: Yang, Lujie, et al.
Publicado: (2021)

Semi-Automated Glycoproteomic Data Analysis of LC-MS Data Using GlycopeptideGraphMS in Process Development of Monoclonal Antibody Biologics
por: Pang, Kuin Tian, et al.
Publicado: (2021)

Large-scale Identification of N-linked Intact Glycopeptides in Human Serum using HILIC Enrichment and Spectral Library Search
por: Shu, Qingbo, et al.
Publicado: (2020)

Comparative N-Glycoproteomics Analysis of Clinical Samples Via Different Mass Spectrometry Dissociation Methods
por: Zeng, Wenjuan, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_22vjp8ac9f9trjn4oprunehgge