Cargando…

PRANAS: A New Platform for Retinal Analysis and Simulation

The retina encodes visual scenes by trains of action potentials that are sent to the brain via the optic nerve. In this paper, we describe a new free access user-end software allowing to better understand this coding. It is called PRANAS (https://pranas.inria.fr), standing for Platform for Retinal A...

Descripción completa

Detalles Bibliográficos
Autores principales: Cessac, Bruno, Kornprobst, Pierre, Kraria, Selim, Nasser, Hassan, Pamplona, Daniela, Portelli, Geoffrey, Viéville, Thierry
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5585572/
https://www.ncbi.nlm.nih.gov/pubmed/28919854
http://dx.doi.org/10.3389/fninf.2017.00049
_version_ 1783261656877367296
author Cessac, Bruno
Kornprobst, Pierre
Kraria, Selim
Nasser, Hassan
Pamplona, Daniela
Portelli, Geoffrey
Viéville, Thierry
author_facet Cessac, Bruno
Kornprobst, Pierre
Kraria, Selim
Nasser, Hassan
Pamplona, Daniela
Portelli, Geoffrey
Viéville, Thierry
author_sort Cessac, Bruno
collection PubMed
description The retina encodes visual scenes by trains of action potentials that are sent to the brain via the optic nerve. In this paper, we describe a new free access user-end software allowing to better understand this coding. It is called PRANAS (https://pranas.inria.fr), standing for Platform for Retinal ANalysis And Simulation. PRANAS targets neuroscientists and modelers by providing a unique set of retina-related tools. PRANAS integrates a retina simulator allowing large scale simulations while keeping a strong biological plausibility and a toolbox for the analysis of spike train population statistics. The statistical method (entropy maximization under constraints) takes into account both spatial and temporal correlations as constraints, allowing to analyze the effects of memory on statistics. PRANAS also integrates a tool computing and representing in 3D (time-space) receptive fields. All these tools are accessible through a friendly graphical user interface. The most CPU-costly of them have been implemented to run in parallel.
format Online
Article
Text
id pubmed-5585572
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-55855722017-09-15 PRANAS: A New Platform for Retinal Analysis and Simulation Cessac, Bruno Kornprobst, Pierre Kraria, Selim Nasser, Hassan Pamplona, Daniela Portelli, Geoffrey Viéville, Thierry Front Neuroinform Neuroscience The retina encodes visual scenes by trains of action potentials that are sent to the brain via the optic nerve. In this paper, we describe a new free access user-end software allowing to better understand this coding. It is called PRANAS (https://pranas.inria.fr), standing for Platform for Retinal ANalysis And Simulation. PRANAS targets neuroscientists and modelers by providing a unique set of retina-related tools. PRANAS integrates a retina simulator allowing large scale simulations while keeping a strong biological plausibility and a toolbox for the analysis of spike train population statistics. The statistical method (entropy maximization under constraints) takes into account both spatial and temporal correlations as constraints, allowing to analyze the effects of memory on statistics. PRANAS also integrates a tool computing and representing in 3D (time-space) receptive fields. All these tools are accessible through a friendly graphical user interface. The most CPU-costly of them have been implemented to run in parallel. Frontiers Media S.A. 2017-09-01 /pmc/articles/PMC5585572/ /pubmed/28919854 http://dx.doi.org/10.3389/fninf.2017.00049 Text en Copyright © 2017 Cessac, Kornprobst, Kraria, Nasser, Pamplona, Portelli and Viéville. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Cessac, Bruno
Kornprobst, Pierre
Kraria, Selim
Nasser, Hassan
Pamplona, Daniela
Portelli, Geoffrey
Viéville, Thierry
PRANAS: A New Platform for Retinal Analysis and Simulation
title PRANAS: A New Platform for Retinal Analysis and Simulation
title_full PRANAS: A New Platform for Retinal Analysis and Simulation
title_fullStr PRANAS: A New Platform for Retinal Analysis and Simulation
title_full_unstemmed PRANAS: A New Platform for Retinal Analysis and Simulation
title_short PRANAS: A New Platform for Retinal Analysis and Simulation
title_sort pranas: a new platform for retinal analysis and simulation
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5585572/
https://www.ncbi.nlm.nih.gov/pubmed/28919854
http://dx.doi.org/10.3389/fninf.2017.00049
work_keys_str_mv AT cessacbruno pranasanewplatformforretinalanalysisandsimulation
AT kornprobstpierre pranasanewplatformforretinalanalysisandsimulation
AT krariaselim pranasanewplatformforretinalanalysisandsimulation
AT nasserhassan pranasanewplatformforretinalanalysisandsimulation
AT pamplonadaniela pranasanewplatformforretinalanalysisandsimulation
AT portelligeoffrey pranasanewplatformforretinalanalysisandsimulation
AT vievillethierry pranasanewplatformforretinalanalysisandsimulation