Cargando…
PRANAS: A New Platform for Retinal Analysis and Simulation
The retina encodes visual scenes by trains of action potentials that are sent to the brain via the optic nerve. In this paper, we describe a new free access user-end software allowing to better understand this coding. It is called PRANAS (https://pranas.inria.fr), standing for Platform for Retinal A...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2017
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5585572/ https://www.ncbi.nlm.nih.gov/pubmed/28919854 http://dx.doi.org/10.3389/fninf.2017.00049 |
_version_ | 1783261656877367296 |
---|---|
author | Cessac, Bruno Kornprobst, Pierre Kraria, Selim Nasser, Hassan Pamplona, Daniela Portelli, Geoffrey Viéville, Thierry |
author_facet | Cessac, Bruno Kornprobst, Pierre Kraria, Selim Nasser, Hassan Pamplona, Daniela Portelli, Geoffrey Viéville, Thierry |
author_sort | Cessac, Bruno |
collection | PubMed |
description | The retina encodes visual scenes by trains of action potentials that are sent to the brain via the optic nerve. In this paper, we describe a new free access user-end software allowing to better understand this coding. It is called PRANAS (https://pranas.inria.fr), standing for Platform for Retinal ANalysis And Simulation. PRANAS targets neuroscientists and modelers by providing a unique set of retina-related tools. PRANAS integrates a retina simulator allowing large scale simulations while keeping a strong biological plausibility and a toolbox for the analysis of spike train population statistics. The statistical method (entropy maximization under constraints) takes into account both spatial and temporal correlations as constraints, allowing to analyze the effects of memory on statistics. PRANAS also integrates a tool computing and representing in 3D (time-space) receptive fields. All these tools are accessible through a friendly graphical user interface. The most CPU-costly of them have been implemented to run in parallel. |
format | Online Article Text |
id | pubmed-5585572 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-55855722017-09-15 PRANAS: A New Platform for Retinal Analysis and Simulation Cessac, Bruno Kornprobst, Pierre Kraria, Selim Nasser, Hassan Pamplona, Daniela Portelli, Geoffrey Viéville, Thierry Front Neuroinform Neuroscience The retina encodes visual scenes by trains of action potentials that are sent to the brain via the optic nerve. In this paper, we describe a new free access user-end software allowing to better understand this coding. It is called PRANAS (https://pranas.inria.fr), standing for Platform for Retinal ANalysis And Simulation. PRANAS targets neuroscientists and modelers by providing a unique set of retina-related tools. PRANAS integrates a retina simulator allowing large scale simulations while keeping a strong biological plausibility and a toolbox for the analysis of spike train population statistics. The statistical method (entropy maximization under constraints) takes into account both spatial and temporal correlations as constraints, allowing to analyze the effects of memory on statistics. PRANAS also integrates a tool computing and representing in 3D (time-space) receptive fields. All these tools are accessible through a friendly graphical user interface. The most CPU-costly of them have been implemented to run in parallel. Frontiers Media S.A. 2017-09-01 /pmc/articles/PMC5585572/ /pubmed/28919854 http://dx.doi.org/10.3389/fninf.2017.00049 Text en Copyright © 2017 Cessac, Kornprobst, Kraria, Nasser, Pamplona, Portelli and Viéville. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroscience Cessac, Bruno Kornprobst, Pierre Kraria, Selim Nasser, Hassan Pamplona, Daniela Portelli, Geoffrey Viéville, Thierry PRANAS: A New Platform for Retinal Analysis and Simulation |
title | PRANAS: A New Platform for Retinal Analysis and Simulation |
title_full | PRANAS: A New Platform for Retinal Analysis and Simulation |
title_fullStr | PRANAS: A New Platform for Retinal Analysis and Simulation |
title_full_unstemmed | PRANAS: A New Platform for Retinal Analysis and Simulation |
title_short | PRANAS: A New Platform for Retinal Analysis and Simulation |
title_sort | pranas: a new platform for retinal analysis and simulation |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5585572/ https://www.ncbi.nlm.nih.gov/pubmed/28919854 http://dx.doi.org/10.3389/fninf.2017.00049 |
work_keys_str_mv | AT cessacbruno pranasanewplatformforretinalanalysisandsimulation AT kornprobstpierre pranasanewplatformforretinalanalysisandsimulation AT krariaselim pranasanewplatformforretinalanalysisandsimulation AT nasserhassan pranasanewplatformforretinalanalysisandsimulation AT pamplonadaniela pranasanewplatformforretinalanalysisandsimulation AT portelligeoffrey pranasanewplatformforretinalanalysisandsimulation AT vievillethierry pranasanewplatformforretinalanalysisandsimulation |