Draft genome sequence of the cellulolytic endophyte Chitinophaga costaii A37T2(T)

Here we report the draft genome sequence of Chitinophaga costai A37T2(T) (=CIP 110584(T), =LMG 27458(T)), which was isolated from the endophytic community of Pinus pinaster tree. The total genome size of C. costaii A37T2(T) is 5.07 Mbp, containing 4204 coding sequences. Strain A37T2(T) encoded multi...

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Autores principales: Proença, Diogo N., Whitman, William B., Shapiro, Nicole, Woyke, Tanja, Kyrpides, Nikos C., Morais, Paula V.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2017
Materias:
Short Genome Report
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5585966/
https://www.ncbi.nlm.nih.gov/pubmed/28904742
http://dx.doi.org/10.1186/s40793-017-0262-2
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author Proença, Diogo N.
Whitman, William B.
Shapiro, Nicole
Woyke, Tanja
Kyrpides, Nikos C.
Morais, Paula V.
author_facet Proença, Diogo N.
Whitman, William B.
Shapiro, Nicole
Woyke, Tanja
Kyrpides, Nikos C.
Morais, Paula V.
author_sort Proença, Diogo N.
collection PubMed
description Here we report the draft genome sequence of Chitinophaga costai A37T2(T) (=CIP 110584(T), =LMG 27458(T)), which was isolated from the endophytic community of Pinus pinaster tree. The total genome size of C. costaii A37T2(T) is 5.07 Mbp, containing 4204 coding sequences. Strain A37T2(T) encoded multiple genes likely involved in cellulolytic, chitinolytic and lipolytic activities. This genome showed 1145 unique genes assigned into 109 Cluster of Orthologous Groups in comparison with the complete genome of C. pinensis DSM 2588(T). The genomic information suggests the potential of the strain A37T2(T) to interact with the plant metabolism. As there are only a few bacterial genomes related to Pine Wilt Disease, this work provides a contribution to the field.
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spelling pubmed-55859662017-09-13 Draft genome sequence of the cellulolytic endophyte Chitinophaga costaii A37T2(T) Proença, Diogo N. Whitman, William B. Shapiro, Nicole Woyke, Tanja Kyrpides, Nikos C. Morais, Paula V. Stand Genomic Sci Short Genome Report Here we report the draft genome sequence of Chitinophaga costai A37T2(T) (=CIP 110584(T), =LMG 27458(T)), which was isolated from the endophytic community of Pinus pinaster tree. The total genome size of C. costaii A37T2(T) is 5.07 Mbp, containing 4204 coding sequences. Strain A37T2(T) encoded multiple genes likely involved in cellulolytic, chitinolytic and lipolytic activities. This genome showed 1145 unique genes assigned into 109 Cluster of Orthologous Groups in comparison with the complete genome of C. pinensis DSM 2588(T). The genomic information suggests the potential of the strain A37T2(T) to interact with the plant metabolism. As there are only a few bacterial genomes related to Pine Wilt Disease, this work provides a contribution to the field. BioMed Central 2017-09-06 /pmc/articles/PMC5585966/ /pubmed/28904742 http://dx.doi.org/10.1186/s40793-017-0262-2 Text en © The Author(s). 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Genome Report
Proença, Diogo N.
Whitman, William B.
Shapiro, Nicole
Woyke, Tanja
Kyrpides, Nikos C.
Morais, Paula V.
Draft genome sequence of the cellulolytic endophyte Chitinophaga costaii A37T2(T)
title Draft genome sequence of the cellulolytic endophyte Chitinophaga costaii A37T2(T)
title_full Draft genome sequence of the cellulolytic endophyte Chitinophaga costaii A37T2(T)
title_fullStr Draft genome sequence of the cellulolytic endophyte Chitinophaga costaii A37T2(T)
title_full_unstemmed Draft genome sequence of the cellulolytic endophyte Chitinophaga costaii A37T2(T)
title_short Draft genome sequence of the cellulolytic endophyte Chitinophaga costaii A37T2(T)
title_sort draft genome sequence of the cellulolytic endophyte chitinophaga costaii a37t2(t)
topic Short Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5585966/
https://www.ncbi.nlm.nih.gov/pubmed/28904742
http://dx.doi.org/10.1186/s40793-017-0262-2
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