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A cross-validation-based approach for delimiting reliable home range estimates

BACKGROUND: With decreasing costs of GPS telemetry devices, data repositories of animal movement paths are increasing almost exponentially in size. A series of complex statistical tools have been developed in conjunction with this increase in data. Each of these methods offers certain improvements o...

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Detalles Bibliográficos
Autores principales: Dougherty, Eric R., Carlson, Colin J., Blackburn, Jason K., Getz, Wayne M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5586009/
https://www.ncbi.nlm.nih.gov/pubmed/28904797
http://dx.doi.org/10.1186/s40462-017-0110-4
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author Dougherty, Eric R.
Carlson, Colin J.
Blackburn, Jason K.
Getz, Wayne M.
author_facet Dougherty, Eric R.
Carlson, Colin J.
Blackburn, Jason K.
Getz, Wayne M.
author_sort Dougherty, Eric R.
collection PubMed
description BACKGROUND: With decreasing costs of GPS telemetry devices, data repositories of animal movement paths are increasing almost exponentially in size. A series of complex statistical tools have been developed in conjunction with this increase in data. Each of these methods offers certain improvements over previously proposed methods, but each has certain assumptions or shortcomings that make its general application difficult. In the case of the recently developed Time Local Convex Hull (T-LoCoH) method, the subjectivity in parameter selection serves as one of the primary impediments to its more widespread use. While there are certain advantages to the flexibility it offers for question-driven research, the lack of an objective approach for parameter selection may prevent some users from exploring the benefits of the method. METHODS: Here we present a cross-validation-based approach for selecting parameter values to optimize the T-LoCoH algorithm. We demonstrate the utility of the approach using a case study from the Etosha National Park anthrax system. RESULTS: Utilizing the proposed algorithm, rather than the guidelines in the T-LoCoH documentation, results in significantly different values for derived site fidelity metrics. CONCLUSIONS: Due to its basis in principles of cross-validation, the application of this method offers a more objective approach than the relatively subjective guidelines set forth in the T-LoCoH documentation and enables a more accurate basis for the comparison of home ranges among individuals and species, as well as among studies. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40462-017-0110-4) contains supplementary material, which is available to authorized users.
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spelling pubmed-55860092017-09-13 A cross-validation-based approach for delimiting reliable home range estimates Dougherty, Eric R. Carlson, Colin J. Blackburn, Jason K. Getz, Wayne M. Mov Ecol Methodology Article BACKGROUND: With decreasing costs of GPS telemetry devices, data repositories of animal movement paths are increasing almost exponentially in size. A series of complex statistical tools have been developed in conjunction with this increase in data. Each of these methods offers certain improvements over previously proposed methods, but each has certain assumptions or shortcomings that make its general application difficult. In the case of the recently developed Time Local Convex Hull (T-LoCoH) method, the subjectivity in parameter selection serves as one of the primary impediments to its more widespread use. While there are certain advantages to the flexibility it offers for question-driven research, the lack of an objective approach for parameter selection may prevent some users from exploring the benefits of the method. METHODS: Here we present a cross-validation-based approach for selecting parameter values to optimize the T-LoCoH algorithm. We demonstrate the utility of the approach using a case study from the Etosha National Park anthrax system. RESULTS: Utilizing the proposed algorithm, rather than the guidelines in the T-LoCoH documentation, results in significantly different values for derived site fidelity metrics. CONCLUSIONS: Due to its basis in principles of cross-validation, the application of this method offers a more objective approach than the relatively subjective guidelines set forth in the T-LoCoH documentation and enables a more accurate basis for the comparison of home ranges among individuals and species, as well as among studies. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40462-017-0110-4) contains supplementary material, which is available to authorized users. BioMed Central 2017-09-06 /pmc/articles/PMC5586009/ /pubmed/28904797 http://dx.doi.org/10.1186/s40462-017-0110-4 Text en © The Author(s) 2017 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License(http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver(http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Methodology Article
Dougherty, Eric R.
Carlson, Colin J.
Blackburn, Jason K.
Getz, Wayne M.
A cross-validation-based approach for delimiting reliable home range estimates
title A cross-validation-based approach for delimiting reliable home range estimates
title_full A cross-validation-based approach for delimiting reliable home range estimates
title_fullStr A cross-validation-based approach for delimiting reliable home range estimates
title_full_unstemmed A cross-validation-based approach for delimiting reliable home range estimates
title_short A cross-validation-based approach for delimiting reliable home range estimates
title_sort cross-validation-based approach for delimiting reliable home range estimates
topic Methodology Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5586009/
https://www.ncbi.nlm.nih.gov/pubmed/28904797
http://dx.doi.org/10.1186/s40462-017-0110-4
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