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Forecasting infectious disease emergence subject to seasonal forcing

BACKGROUND: Despite high vaccination coverage, many childhood infections pose a growing threat to human populations. Accurate disease forecasting would be of tremendous value to public health. Forecasting disease emergence using early warning signals (EWS) is possible in non-seasonal models of infec...

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Autores principales: Miller, Paige B., O’Dea, Eamon B., Rohani, Pejman, Drake, John M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5586031/
https://www.ncbi.nlm.nih.gov/pubmed/28874167
http://dx.doi.org/10.1186/s12976-017-0063-8
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author Miller, Paige B.
O’Dea, Eamon B.
Rohani, Pejman
Drake, John M.
author_facet Miller, Paige B.
O’Dea, Eamon B.
Rohani, Pejman
Drake, John M.
author_sort Miller, Paige B.
collection PubMed
description BACKGROUND: Despite high vaccination coverage, many childhood infections pose a growing threat to human populations. Accurate disease forecasting would be of tremendous value to public health. Forecasting disease emergence using early warning signals (EWS) is possible in non-seasonal models of infectious diseases. Here, we assessed whether EWS also anticipate disease emergence in seasonal models. METHODS: We simulated the dynamics of an immunizing infectious pathogen approaching the tipping point to disease endemicity. To explore the effect of seasonality on the reliability of early warning statistics, we varied the amplitude of fluctuations around the average transmission. We proposed and analyzed two new early warning signals based on the wavelet spectrum. We measured the reliability of the early warning signals depending on the strength of their trend preceding the tipping point and then calculated the Area Under the Curve (AUC) statistic. RESULTS: Early warning signals were reliable when disease transmission was subject to seasonal forcing. Wavelet-based early warning signals were as reliable as other conventional early warning signals. We found that removing seasonal trends, prior to analysis, did not improve early warning statistics uniformly. CONCLUSIONS: Early warning signals anticipate the onset of critical transitions for infectious diseases which are subject to seasonal forcing. Wavelet-based early warning statistics can also be used to forecast infectious disease. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12976-017-0063-8) contains supplementary material, which is available to authorized users.
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spelling pubmed-55860312017-09-06 Forecasting infectious disease emergence subject to seasonal forcing Miller, Paige B. O’Dea, Eamon B. Rohani, Pejman Drake, John M. Theor Biol Med Model Research BACKGROUND: Despite high vaccination coverage, many childhood infections pose a growing threat to human populations. Accurate disease forecasting would be of tremendous value to public health. Forecasting disease emergence using early warning signals (EWS) is possible in non-seasonal models of infectious diseases. Here, we assessed whether EWS also anticipate disease emergence in seasonal models. METHODS: We simulated the dynamics of an immunizing infectious pathogen approaching the tipping point to disease endemicity. To explore the effect of seasonality on the reliability of early warning statistics, we varied the amplitude of fluctuations around the average transmission. We proposed and analyzed two new early warning signals based on the wavelet spectrum. We measured the reliability of the early warning signals depending on the strength of their trend preceding the tipping point and then calculated the Area Under the Curve (AUC) statistic. RESULTS: Early warning signals were reliable when disease transmission was subject to seasonal forcing. Wavelet-based early warning signals were as reliable as other conventional early warning signals. We found that removing seasonal trends, prior to analysis, did not improve early warning statistics uniformly. CONCLUSIONS: Early warning signals anticipate the onset of critical transitions for infectious diseases which are subject to seasonal forcing. Wavelet-based early warning statistics can also be used to forecast infectious disease. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12976-017-0063-8) contains supplementary material, which is available to authorized users. BioMed Central 2017-09-06 /pmc/articles/PMC5586031/ /pubmed/28874167 http://dx.doi.org/10.1186/s12976-017-0063-8 Text en © The Author(s) 2017 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License(http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research
Miller, Paige B.
O’Dea, Eamon B.
Rohani, Pejman
Drake, John M.
Forecasting infectious disease emergence subject to seasonal forcing
title Forecasting infectious disease emergence subject to seasonal forcing
title_full Forecasting infectious disease emergence subject to seasonal forcing
title_fullStr Forecasting infectious disease emergence subject to seasonal forcing
title_full_unstemmed Forecasting infectious disease emergence subject to seasonal forcing
title_short Forecasting infectious disease emergence subject to seasonal forcing
title_sort forecasting infectious disease emergence subject to seasonal forcing
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5586031/
https://www.ncbi.nlm.nih.gov/pubmed/28874167
http://dx.doi.org/10.1186/s12976-017-0063-8
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