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Forecasting infectious disease emergence subject to seasonal forcing
BACKGROUND: Despite high vaccination coverage, many childhood infections pose a growing threat to human populations. Accurate disease forecasting would be of tremendous value to public health. Forecasting disease emergence using early warning signals (EWS) is possible in non-seasonal models of infec...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5586031/ https://www.ncbi.nlm.nih.gov/pubmed/28874167 http://dx.doi.org/10.1186/s12976-017-0063-8 |
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author | Miller, Paige B. O’Dea, Eamon B. Rohani, Pejman Drake, John M. |
author_facet | Miller, Paige B. O’Dea, Eamon B. Rohani, Pejman Drake, John M. |
author_sort | Miller, Paige B. |
collection | PubMed |
description | BACKGROUND: Despite high vaccination coverage, many childhood infections pose a growing threat to human populations. Accurate disease forecasting would be of tremendous value to public health. Forecasting disease emergence using early warning signals (EWS) is possible in non-seasonal models of infectious diseases. Here, we assessed whether EWS also anticipate disease emergence in seasonal models. METHODS: We simulated the dynamics of an immunizing infectious pathogen approaching the tipping point to disease endemicity. To explore the effect of seasonality on the reliability of early warning statistics, we varied the amplitude of fluctuations around the average transmission. We proposed and analyzed two new early warning signals based on the wavelet spectrum. We measured the reliability of the early warning signals depending on the strength of their trend preceding the tipping point and then calculated the Area Under the Curve (AUC) statistic. RESULTS: Early warning signals were reliable when disease transmission was subject to seasonal forcing. Wavelet-based early warning signals were as reliable as other conventional early warning signals. We found that removing seasonal trends, prior to analysis, did not improve early warning statistics uniformly. CONCLUSIONS: Early warning signals anticipate the onset of critical transitions for infectious diseases which are subject to seasonal forcing. Wavelet-based early warning statistics can also be used to forecast infectious disease. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12976-017-0063-8) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-5586031 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-55860312017-09-06 Forecasting infectious disease emergence subject to seasonal forcing Miller, Paige B. O’Dea, Eamon B. Rohani, Pejman Drake, John M. Theor Biol Med Model Research BACKGROUND: Despite high vaccination coverage, many childhood infections pose a growing threat to human populations. Accurate disease forecasting would be of tremendous value to public health. Forecasting disease emergence using early warning signals (EWS) is possible in non-seasonal models of infectious diseases. Here, we assessed whether EWS also anticipate disease emergence in seasonal models. METHODS: We simulated the dynamics of an immunizing infectious pathogen approaching the tipping point to disease endemicity. To explore the effect of seasonality on the reliability of early warning statistics, we varied the amplitude of fluctuations around the average transmission. We proposed and analyzed two new early warning signals based on the wavelet spectrum. We measured the reliability of the early warning signals depending on the strength of their trend preceding the tipping point and then calculated the Area Under the Curve (AUC) statistic. RESULTS: Early warning signals were reliable when disease transmission was subject to seasonal forcing. Wavelet-based early warning signals were as reliable as other conventional early warning signals. We found that removing seasonal trends, prior to analysis, did not improve early warning statistics uniformly. CONCLUSIONS: Early warning signals anticipate the onset of critical transitions for infectious diseases which are subject to seasonal forcing. Wavelet-based early warning statistics can also be used to forecast infectious disease. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12976-017-0063-8) contains supplementary material, which is available to authorized users. BioMed Central 2017-09-06 /pmc/articles/PMC5586031/ /pubmed/28874167 http://dx.doi.org/10.1186/s12976-017-0063-8 Text en © The Author(s) 2017 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License(http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Miller, Paige B. O’Dea, Eamon B. Rohani, Pejman Drake, John M. Forecasting infectious disease emergence subject to seasonal forcing |
title | Forecasting infectious disease emergence subject to seasonal forcing |
title_full | Forecasting infectious disease emergence subject to seasonal forcing |
title_fullStr | Forecasting infectious disease emergence subject to seasonal forcing |
title_full_unstemmed | Forecasting infectious disease emergence subject to seasonal forcing |
title_short | Forecasting infectious disease emergence subject to seasonal forcing |
title_sort | forecasting infectious disease emergence subject to seasonal forcing |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5586031/ https://www.ncbi.nlm.nih.gov/pubmed/28874167 http://dx.doi.org/10.1186/s12976-017-0063-8 |
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