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AUSPEX: a graphical tool for X-ray diffraction data analysis

In this paper, AUSPEX, a new software tool for experimental X-ray data analysis, is presented. Exploring the behaviour of diffraction intensities and the associated estimated uncertainties facilitates the discovery of underlying problems and can help users to improve their data acquisition and proce...

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Autores principales: Thorn, Andrea, Parkhurst, James, Emsley, Paul, Nicholls, Robert A., Vollmar, Melanie, Evans, Gwyndaf, Murshudov, Garib N.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5586246/
https://www.ncbi.nlm.nih.gov/pubmed/28876236
http://dx.doi.org/10.1107/S205979831700969X
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author Thorn, Andrea
Parkhurst, James
Emsley, Paul
Nicholls, Robert A.
Vollmar, Melanie
Evans, Gwyndaf
Murshudov, Garib N.
author_facet Thorn, Andrea
Parkhurst, James
Emsley, Paul
Nicholls, Robert A.
Vollmar, Melanie
Evans, Gwyndaf
Murshudov, Garib N.
author_sort Thorn, Andrea
collection PubMed
description In this paper, AUSPEX, a new software tool for experimental X-ray data analysis, is presented. Exploring the behaviour of diffraction intensities and the associated estimated uncertainties facilitates the discovery of underlying problems and can help users to improve their data acquisition and processing in order to obtain better structural models. The program enables users to inspect the distribution of observed intensities (or amplitudes) against resolution as well as the associated estimated uncertainties (sigmas). It is demonstrated how AUSPEX can be used to visually and automatically detect ice-ring artefacts in integrated X-ray diffraction data. Such artefacts can hamper structure determination, but may be difficult to identify from the raw diffraction images produced by modern pixel detectors. The analysis suggests that a significant portion of the data sets deposited in the PDB contain ice-ring artefacts. Furthermore, it is demonstrated how other problems in experimental X-ray data caused, for example, by scaling and data-conversion procedures can be detected by AUSPEX.
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spelling pubmed-55862462017-09-13 AUSPEX: a graphical tool for X-ray diffraction data analysis Thorn, Andrea Parkhurst, James Emsley, Paul Nicholls, Robert A. Vollmar, Melanie Evans, Gwyndaf Murshudov, Garib N. Acta Crystallogr D Struct Biol Research Papers In this paper, AUSPEX, a new software tool for experimental X-ray data analysis, is presented. Exploring the behaviour of diffraction intensities and the associated estimated uncertainties facilitates the discovery of underlying problems and can help users to improve their data acquisition and processing in order to obtain better structural models. The program enables users to inspect the distribution of observed intensities (or amplitudes) against resolution as well as the associated estimated uncertainties (sigmas). It is demonstrated how AUSPEX can be used to visually and automatically detect ice-ring artefacts in integrated X-ray diffraction data. Such artefacts can hamper structure determination, but may be difficult to identify from the raw diffraction images produced by modern pixel detectors. The analysis suggests that a significant portion of the data sets deposited in the PDB contain ice-ring artefacts. Furthermore, it is demonstrated how other problems in experimental X-ray data caused, for example, by scaling and data-conversion procedures can be detected by AUSPEX. International Union of Crystallography 2017-08-08 /pmc/articles/PMC5586246/ /pubmed/28876236 http://dx.doi.org/10.1107/S205979831700969X Text en © Thorn et al. 2017 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/2.0/uk/
spellingShingle Research Papers
Thorn, Andrea
Parkhurst, James
Emsley, Paul
Nicholls, Robert A.
Vollmar, Melanie
Evans, Gwyndaf
Murshudov, Garib N.
AUSPEX: a graphical tool for X-ray diffraction data analysis
title AUSPEX: a graphical tool for X-ray diffraction data analysis
title_full AUSPEX: a graphical tool for X-ray diffraction data analysis
title_fullStr AUSPEX: a graphical tool for X-ray diffraction data analysis
title_full_unstemmed AUSPEX: a graphical tool for X-ray diffraction data analysis
title_short AUSPEX: a graphical tool for X-ray diffraction data analysis
title_sort auspex: a graphical tool for x-ray diffraction data analysis
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5586246/
https://www.ncbi.nlm.nih.gov/pubmed/28876236
http://dx.doi.org/10.1107/S205979831700969X
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