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The second Southern African Bird Atlas Project: Causes and consequences of geographical sampling bias

Using the Southern African Bird Atlas Project (SABAP2) as a case study, we examine the possible determinants of spatial bias in volunteer sampling effort and how well such biased data represent environmental gradients across the area covered by the atlas. For each province in South Africa, we used g...

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Autores principales: Hugo, Sanet, Altwegg, Res
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5587490/
https://www.ncbi.nlm.nih.gov/pubmed/28904764
http://dx.doi.org/10.1002/ece3.3228
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author Hugo, Sanet
Altwegg, Res
author_facet Hugo, Sanet
Altwegg, Res
author_sort Hugo, Sanet
collection PubMed
description Using the Southern African Bird Atlas Project (SABAP2) as a case study, we examine the possible determinants of spatial bias in volunteer sampling effort and how well such biased data represent environmental gradients across the area covered by the atlas. For each province in South Africa, we used generalized linear mixed models to determine the combination of variables that explain spatial variation in sampling effort (number of visits per 5′ × 5′ grid cell, or “pentad”). The explanatory variables were distance to major road and exceptional birding locations or “sampling hubs,” percentage cover of protected, urban, and cultivated area, and the climate variables mean annual precipitation, winter temperatures, and summer temperatures. Further, we used the climate variables and plant biomes to define subsets of pentads representing environmental zones across South Africa, Lesotho, and Swaziland. For each environmental zone, we quantified sampling intensity, and we assessed sampling completeness with species accumulation curves fitted to the asymptotic Lomolino model. Sampling effort was highest close to sampling hubs, major roads, urban areas, and protected areas. Cultivated area and the climate variables were less important. Further, environmental zones were not evenly represented by current data and the zones varied in the amount of sampling required representing the species that are present. SABAP2 volunteers' preferences in birding locations cause spatial bias in the dataset that should be taken into account when analyzing these data. Large parts of South Africa remain underrepresented, which may restrict the kind of ecological questions that may be addressed. However, sampling bias may be improved by directing volunteers toward undersampled regions while taking into account volunteer preferences.
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spelling pubmed-55874902017-09-13 The second Southern African Bird Atlas Project: Causes and consequences of geographical sampling bias Hugo, Sanet Altwegg, Res Ecol Evol Original Research Using the Southern African Bird Atlas Project (SABAP2) as a case study, we examine the possible determinants of spatial bias in volunteer sampling effort and how well such biased data represent environmental gradients across the area covered by the atlas. For each province in South Africa, we used generalized linear mixed models to determine the combination of variables that explain spatial variation in sampling effort (number of visits per 5′ × 5′ grid cell, or “pentad”). The explanatory variables were distance to major road and exceptional birding locations or “sampling hubs,” percentage cover of protected, urban, and cultivated area, and the climate variables mean annual precipitation, winter temperatures, and summer temperatures. Further, we used the climate variables and plant biomes to define subsets of pentads representing environmental zones across South Africa, Lesotho, and Swaziland. For each environmental zone, we quantified sampling intensity, and we assessed sampling completeness with species accumulation curves fitted to the asymptotic Lomolino model. Sampling effort was highest close to sampling hubs, major roads, urban areas, and protected areas. Cultivated area and the climate variables were less important. Further, environmental zones were not evenly represented by current data and the zones varied in the amount of sampling required representing the species that are present. SABAP2 volunteers' preferences in birding locations cause spatial bias in the dataset that should be taken into account when analyzing these data. Large parts of South Africa remain underrepresented, which may restrict the kind of ecological questions that may be addressed. However, sampling bias may be improved by directing volunteers toward undersampled regions while taking into account volunteer preferences. John Wiley and Sons Inc. 2017-07-27 /pmc/articles/PMC5587490/ /pubmed/28904764 http://dx.doi.org/10.1002/ece3.3228 Text en © 2017 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the Creative Commons Attribution (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Hugo, Sanet
Altwegg, Res
The second Southern African Bird Atlas Project: Causes and consequences of geographical sampling bias
title The second Southern African Bird Atlas Project: Causes and consequences of geographical sampling bias
title_full The second Southern African Bird Atlas Project: Causes and consequences of geographical sampling bias
title_fullStr The second Southern African Bird Atlas Project: Causes and consequences of geographical sampling bias
title_full_unstemmed The second Southern African Bird Atlas Project: Causes and consequences of geographical sampling bias
title_short The second Southern African Bird Atlas Project: Causes and consequences of geographical sampling bias
title_sort second southern african bird atlas project: causes and consequences of geographical sampling bias
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5587490/
https://www.ncbi.nlm.nih.gov/pubmed/28904764
http://dx.doi.org/10.1002/ece3.3228
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