Cargando…

Characterization of Protein–Protein Interfaces in Large Complexes by Solid-State NMR Solvent Paramagnetic Relaxation Enhancements

[Image: see text] Solid-state NMR is becoming a viable alternative for obtaining information about structures and dynamics of large biomolecular complexes, including ones that are not accessible to other high-resolution biophysical techniques. In this context, methods for probing protein–protein int...

Descripción completa

Detalles Bibliográficos
Autores principales: Öster, Carl, Kosol, Simone, Hartlmüller, Christoph, Lamley, Jonathan M., Iuga, Dinu, Oss, Andres, Org, Mai-Liis, Vanatalu, Kalju, Samoson, Ago, Madl, Tobias, Lewandowski, Józef R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2017
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5590091/
https://www.ncbi.nlm.nih.gov/pubmed/28780861
http://dx.doi.org/10.1021/jacs.7b03875
_version_ 1783262467029204992
author Öster, Carl
Kosol, Simone
Hartlmüller, Christoph
Lamley, Jonathan M.
Iuga, Dinu
Oss, Andres
Org, Mai-Liis
Vanatalu, Kalju
Samoson, Ago
Madl, Tobias
Lewandowski, Józef R.
author_facet Öster, Carl
Kosol, Simone
Hartlmüller, Christoph
Lamley, Jonathan M.
Iuga, Dinu
Oss, Andres
Org, Mai-Liis
Vanatalu, Kalju
Samoson, Ago
Madl, Tobias
Lewandowski, Józef R.
author_sort Öster, Carl
collection PubMed
description [Image: see text] Solid-state NMR is becoming a viable alternative for obtaining information about structures and dynamics of large biomolecular complexes, including ones that are not accessible to other high-resolution biophysical techniques. In this context, methods for probing protein–protein interfaces at atomic resolution are highly desirable. Solvent paramagnetic relaxation enhancements (sPREs) proved to be a powerful method for probing protein–protein interfaces in large complexes in solution but have not been employed toward this goal in the solid state. We demonstrate that (1)H and (15)N relaxation-based sPREs provide a powerful tool for characterizing intermolecular interactions in large assemblies in the solid state. We present approaches for measuring sPREs in practically the entire range of magic angle spinning frequencies used for biomolecular studies and discuss their benefits and limitations. We validate the approach on crystalline GB1, with our experimental results in good agreement with theoretical predictions. Finally, we use sPREs to characterize protein–protein interfaces in the GB1 complex with immunoglobulin G (IgG). Our results suggest the potential existence of an additional binding site and provide new insights into GB1:IgG complex structure that amend and revise the current model available from studies with IgG fragments. We demonstrate sPREs as a practical, widely applicable, robust, and very sensitive technique for determining intermolecular interaction interfaces in large biomolecular complexes in the solid state.
format Online
Article
Text
id pubmed-5590091
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher American Chemical Society
record_format MEDLINE/PubMed
spelling pubmed-55900912017-09-11 Characterization of Protein–Protein Interfaces in Large Complexes by Solid-State NMR Solvent Paramagnetic Relaxation Enhancements Öster, Carl Kosol, Simone Hartlmüller, Christoph Lamley, Jonathan M. Iuga, Dinu Oss, Andres Org, Mai-Liis Vanatalu, Kalju Samoson, Ago Madl, Tobias Lewandowski, Józef R. J Am Chem Soc [Image: see text] Solid-state NMR is becoming a viable alternative for obtaining information about structures and dynamics of large biomolecular complexes, including ones that are not accessible to other high-resolution biophysical techniques. In this context, methods for probing protein–protein interfaces at atomic resolution are highly desirable. Solvent paramagnetic relaxation enhancements (sPREs) proved to be a powerful method for probing protein–protein interfaces in large complexes in solution but have not been employed toward this goal in the solid state. We demonstrate that (1)H and (15)N relaxation-based sPREs provide a powerful tool for characterizing intermolecular interactions in large assemblies in the solid state. We present approaches for measuring sPREs in practically the entire range of magic angle spinning frequencies used for biomolecular studies and discuss their benefits and limitations. We validate the approach on crystalline GB1, with our experimental results in good agreement with theoretical predictions. Finally, we use sPREs to characterize protein–protein interfaces in the GB1 complex with immunoglobulin G (IgG). Our results suggest the potential existence of an additional binding site and provide new insights into GB1:IgG complex structure that amend and revise the current model available from studies with IgG fragments. We demonstrate sPREs as a practical, widely applicable, robust, and very sensitive technique for determining intermolecular interaction interfaces in large biomolecular complexes in the solid state. American Chemical Society 2017-08-07 2017-09-06 /pmc/articles/PMC5590091/ /pubmed/28780861 http://dx.doi.org/10.1021/jacs.7b03875 Text en Copyright © 2017 American Chemical Society This is an open access article published under a Creative Commons Attribution (CC-BY) License (http://pubs.acs.org/page/policy/authorchoice_ccby_termsofuse.html) , which permits unrestricted use, distribution and reproduction in any medium, provided the author and source are cited.
spellingShingle Öster, Carl
Kosol, Simone
Hartlmüller, Christoph
Lamley, Jonathan M.
Iuga, Dinu
Oss, Andres
Org, Mai-Liis
Vanatalu, Kalju
Samoson, Ago
Madl, Tobias
Lewandowski, Józef R.
Characterization of Protein–Protein Interfaces in Large Complexes by Solid-State NMR Solvent Paramagnetic Relaxation Enhancements
title Characterization of Protein–Protein Interfaces in Large Complexes by Solid-State NMR Solvent Paramagnetic Relaxation Enhancements
title_full Characterization of Protein–Protein Interfaces in Large Complexes by Solid-State NMR Solvent Paramagnetic Relaxation Enhancements
title_fullStr Characterization of Protein–Protein Interfaces in Large Complexes by Solid-State NMR Solvent Paramagnetic Relaxation Enhancements
title_full_unstemmed Characterization of Protein–Protein Interfaces in Large Complexes by Solid-State NMR Solvent Paramagnetic Relaxation Enhancements
title_short Characterization of Protein–Protein Interfaces in Large Complexes by Solid-State NMR Solvent Paramagnetic Relaxation Enhancements
title_sort characterization of protein–protein interfaces in large complexes by solid-state nmr solvent paramagnetic relaxation enhancements
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5590091/
https://www.ncbi.nlm.nih.gov/pubmed/28780861
http://dx.doi.org/10.1021/jacs.7b03875
work_keys_str_mv AT ostercarl characterizationofproteinproteininterfacesinlargecomplexesbysolidstatenmrsolventparamagneticrelaxationenhancements
AT kosolsimone characterizationofproteinproteininterfacesinlargecomplexesbysolidstatenmrsolventparamagneticrelaxationenhancements
AT hartlmullerchristoph characterizationofproteinproteininterfacesinlargecomplexesbysolidstatenmrsolventparamagneticrelaxationenhancements
AT lamleyjonathanm characterizationofproteinproteininterfacesinlargecomplexesbysolidstatenmrsolventparamagneticrelaxationenhancements
AT iugadinu characterizationofproteinproteininterfacesinlargecomplexesbysolidstatenmrsolventparamagneticrelaxationenhancements
AT ossandres characterizationofproteinproteininterfacesinlargecomplexesbysolidstatenmrsolventparamagneticrelaxationenhancements
AT orgmailiis characterizationofproteinproteininterfacesinlargecomplexesbysolidstatenmrsolventparamagneticrelaxationenhancements
AT vanatalukalju characterizationofproteinproteininterfacesinlargecomplexesbysolidstatenmrsolventparamagneticrelaxationenhancements
AT samosonago characterizationofproteinproteininterfacesinlargecomplexesbysolidstatenmrsolventparamagneticrelaxationenhancements
AT madltobias characterizationofproteinproteininterfacesinlargecomplexesbysolidstatenmrsolventparamagneticrelaxationenhancements
AT lewandowskijozefr characterizationofproteinproteininterfacesinlargecomplexesbysolidstatenmrsolventparamagneticrelaxationenhancements