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Rhizospheric metagenome of the terrestrial mangrove fern Acrostichum from Indian Sunderbans

This study reports the analyses of the rhizospheric microbiome of the terrestrial mangrove fern Acrostichum aureum Linn. from the Indian Sunderbans. Samples were collected using standard protocols and 16S rRNA gene V3–V4 region amplicon sequencing was performed to identify the microbial communities...

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Detalles Bibliográficos
Autores principales: Ganguli, Sayak, Rahaman, Sabdar, Bera, Abhishek R., Vishal, Vineet, Malik, Shelvia, Roopalakshmi, K., Singh, Pankaj K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5596254/
https://www.ncbi.nlm.nih.gov/pubmed/28932683
http://dx.doi.org/10.1016/j.gdata.2017.09.001
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author Ganguli, Sayak
Rahaman, Sabdar
Bera, Abhishek R.
Vishal, Vineet
Malik, Shelvia
Roopalakshmi, K.
Singh, Pankaj K.
author_facet Ganguli, Sayak
Rahaman, Sabdar
Bera, Abhishek R.
Vishal, Vineet
Malik, Shelvia
Roopalakshmi, K.
Singh, Pankaj K.
author_sort Ganguli, Sayak
collection PubMed
description This study reports the analyses of the rhizospheric microbiome of the terrestrial mangrove fern Acrostichum aureum Linn. from the Indian Sunderbans. Samples were collected using standard protocols and 16S rRNA gene V3–V4 region amplicon sequencing was performed to identify the microbial communities prevalent in the rhizosphere. A total of 1,931,252 quality checked reads were assembled into 204,818 contigs and were analysed using QIIME to reveal the abundance of Proteobacteria, Acidobacteria and Planctomycetes. The data is available at the NCBI - Sequence Read Archive with accession number: SRX2660456. This is the first report of the rhizospheric microbiome belonging to a fern species.
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spelling pubmed-55962542017-09-20 Rhizospheric metagenome of the terrestrial mangrove fern Acrostichum from Indian Sunderbans Ganguli, Sayak Rahaman, Sabdar Bera, Abhishek R. Vishal, Vineet Malik, Shelvia Roopalakshmi, K. Singh, Pankaj K. Genom Data Data in Brief This study reports the analyses of the rhizospheric microbiome of the terrestrial mangrove fern Acrostichum aureum Linn. from the Indian Sunderbans. Samples were collected using standard protocols and 16S rRNA gene V3–V4 region amplicon sequencing was performed to identify the microbial communities prevalent in the rhizosphere. A total of 1,931,252 quality checked reads were assembled into 204,818 contigs and were analysed using QIIME to reveal the abundance of Proteobacteria, Acidobacteria and Planctomycetes. The data is available at the NCBI - Sequence Read Archive with accession number: SRX2660456. This is the first report of the rhizospheric microbiome belonging to a fern species. Elsevier 2017-09-05 /pmc/articles/PMC5596254/ /pubmed/28932683 http://dx.doi.org/10.1016/j.gdata.2017.09.001 Text en © 2017 Published by Elsevier Inc. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Data in Brief
Ganguli, Sayak
Rahaman, Sabdar
Bera, Abhishek R.
Vishal, Vineet
Malik, Shelvia
Roopalakshmi, K.
Singh, Pankaj K.
Rhizospheric metagenome of the terrestrial mangrove fern Acrostichum from Indian Sunderbans
title Rhizospheric metagenome of the terrestrial mangrove fern Acrostichum from Indian Sunderbans
title_full Rhizospheric metagenome of the terrestrial mangrove fern Acrostichum from Indian Sunderbans
title_fullStr Rhizospheric metagenome of the terrestrial mangrove fern Acrostichum from Indian Sunderbans
title_full_unstemmed Rhizospheric metagenome of the terrestrial mangrove fern Acrostichum from Indian Sunderbans
title_short Rhizospheric metagenome of the terrestrial mangrove fern Acrostichum from Indian Sunderbans
title_sort rhizospheric metagenome of the terrestrial mangrove fern acrostichum from indian sunderbans
topic Data in Brief
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5596254/
https://www.ncbi.nlm.nih.gov/pubmed/28932683
http://dx.doi.org/10.1016/j.gdata.2017.09.001
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