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Rhizospheric metagenome of the terrestrial mangrove fern Acrostichum from Indian Sunderbans
This study reports the analyses of the rhizospheric microbiome of the terrestrial mangrove fern Acrostichum aureum Linn. from the Indian Sunderbans. Samples were collected using standard protocols and 16S rRNA gene V3–V4 region amplicon sequencing was performed to identify the microbial communities...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5596254/ https://www.ncbi.nlm.nih.gov/pubmed/28932683 http://dx.doi.org/10.1016/j.gdata.2017.09.001 |
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author | Ganguli, Sayak Rahaman, Sabdar Bera, Abhishek R. Vishal, Vineet Malik, Shelvia Roopalakshmi, K. Singh, Pankaj K. |
author_facet | Ganguli, Sayak Rahaman, Sabdar Bera, Abhishek R. Vishal, Vineet Malik, Shelvia Roopalakshmi, K. Singh, Pankaj K. |
author_sort | Ganguli, Sayak |
collection | PubMed |
description | This study reports the analyses of the rhizospheric microbiome of the terrestrial mangrove fern Acrostichum aureum Linn. from the Indian Sunderbans. Samples were collected using standard protocols and 16S rRNA gene V3–V4 region amplicon sequencing was performed to identify the microbial communities prevalent in the rhizosphere. A total of 1,931,252 quality checked reads were assembled into 204,818 contigs and were analysed using QIIME to reveal the abundance of Proteobacteria, Acidobacteria and Planctomycetes. The data is available at the NCBI - Sequence Read Archive with accession number: SRX2660456. This is the first report of the rhizospheric microbiome belonging to a fern species. |
format | Online Article Text |
id | pubmed-5596254 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-55962542017-09-20 Rhizospheric metagenome of the terrestrial mangrove fern Acrostichum from Indian Sunderbans Ganguli, Sayak Rahaman, Sabdar Bera, Abhishek R. Vishal, Vineet Malik, Shelvia Roopalakshmi, K. Singh, Pankaj K. Genom Data Data in Brief This study reports the analyses of the rhizospheric microbiome of the terrestrial mangrove fern Acrostichum aureum Linn. from the Indian Sunderbans. Samples were collected using standard protocols and 16S rRNA gene V3–V4 region amplicon sequencing was performed to identify the microbial communities prevalent in the rhizosphere. A total of 1,931,252 quality checked reads were assembled into 204,818 contigs and were analysed using QIIME to reveal the abundance of Proteobacteria, Acidobacteria and Planctomycetes. The data is available at the NCBI - Sequence Read Archive with accession number: SRX2660456. This is the first report of the rhizospheric microbiome belonging to a fern species. Elsevier 2017-09-05 /pmc/articles/PMC5596254/ /pubmed/28932683 http://dx.doi.org/10.1016/j.gdata.2017.09.001 Text en © 2017 Published by Elsevier Inc. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Data in Brief Ganguli, Sayak Rahaman, Sabdar Bera, Abhishek R. Vishal, Vineet Malik, Shelvia Roopalakshmi, K. Singh, Pankaj K. Rhizospheric metagenome of the terrestrial mangrove fern Acrostichum from Indian Sunderbans |
title | Rhizospheric metagenome of the terrestrial mangrove fern Acrostichum from Indian Sunderbans |
title_full | Rhizospheric metagenome of the terrestrial mangrove fern Acrostichum from Indian Sunderbans |
title_fullStr | Rhizospheric metagenome of the terrestrial mangrove fern Acrostichum from Indian Sunderbans |
title_full_unstemmed | Rhizospheric metagenome of the terrestrial mangrove fern Acrostichum from Indian Sunderbans |
title_short | Rhizospheric metagenome of the terrestrial mangrove fern Acrostichum from Indian Sunderbans |
title_sort | rhizospheric metagenome of the terrestrial mangrove fern acrostichum from indian sunderbans |
topic | Data in Brief |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5596254/ https://www.ncbi.nlm.nih.gov/pubmed/28932683 http://dx.doi.org/10.1016/j.gdata.2017.09.001 |
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