Genome sequence of the white-rot fungus Irpex lacteus F17, a type strain of lignin degrader fungus

Irpex lacteus, a cosmopolitan white-rot fungus, degrades lignin and lignin-derived aromatic compounds. In this study, we report the high-quality draft genome sequence of I. lacteus F17, isolated from a decaying hardwood tree in the vicinity of Hefei, China. The genome is 44,362,654 bp, with a GC con...

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Autores principales: Yao, Mengwei, Li, Wenman, Duan, Zihong, Zhang, Yinliang, Jia, Rong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2017
Materias:
Short Genome Report
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5596461/
https://www.ncbi.nlm.nih.gov/pubmed/28919942
http://dx.doi.org/10.1186/s40793-017-0267-x
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author Yao, Mengwei
Li, Wenman
Duan, Zihong
Zhang, Yinliang
Jia, Rong
author_facet Yao, Mengwei
Li, Wenman
Duan, Zihong
Zhang, Yinliang
Jia, Rong
author_sort Yao, Mengwei
collection PubMed
description Irpex lacteus, a cosmopolitan white-rot fungus, degrades lignin and lignin-derived aromatic compounds. In this study, we report the high-quality draft genome sequence of I. lacteus F17, isolated from a decaying hardwood tree in the vicinity of Hefei, China. The genome is 44,362,654 bp, with a GC content of 49.64% and a total of 10,391 predicted protein-coding genes. In addition, a total of 18 snRNA, 842 tRNA, 15 rRNA operons and 11,710 repetitive sequences were also identified. The genomic data provides insights into the mechanisms of the efficient lignin decomposition of this strain. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s40793-017-0267-x) contains supplementary material, which is available to authorized users.
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spelling pubmed-55964612017-09-15 Genome sequence of the white-rot fungus Irpex lacteus F17, a type strain of lignin degrader fungus Yao, Mengwei Li, Wenman Duan, Zihong Zhang, Yinliang Jia, Rong Stand Genomic Sci Short Genome Report Irpex lacteus, a cosmopolitan white-rot fungus, degrades lignin and lignin-derived aromatic compounds. In this study, we report the high-quality draft genome sequence of I. lacteus F17, isolated from a decaying hardwood tree in the vicinity of Hefei, China. The genome is 44,362,654 bp, with a GC content of 49.64% and a total of 10,391 predicted protein-coding genes. In addition, a total of 18 snRNA, 842 tRNA, 15 rRNA operons and 11,710 repetitive sequences were also identified. The genomic data provides insights into the mechanisms of the efficient lignin decomposition of this strain. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s40793-017-0267-x) contains supplementary material, which is available to authorized users. BioMed Central 2017-09-12 /pmc/articles/PMC5596461/ /pubmed/28919942 http://dx.doi.org/10.1186/s40793-017-0267-x Text en © The Author(s). 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Genome Report
Yao, Mengwei
Li, Wenman
Duan, Zihong
Zhang, Yinliang
Jia, Rong
Genome sequence of the white-rot fungus Irpex lacteus F17, a type strain of lignin degrader fungus
title Genome sequence of the white-rot fungus Irpex lacteus F17, a type strain of lignin degrader fungus
title_full Genome sequence of the white-rot fungus Irpex lacteus F17, a type strain of lignin degrader fungus
title_fullStr Genome sequence of the white-rot fungus Irpex lacteus F17, a type strain of lignin degrader fungus
title_full_unstemmed Genome sequence of the white-rot fungus Irpex lacteus F17, a type strain of lignin degrader fungus
title_short Genome sequence of the white-rot fungus Irpex lacteus F17, a type strain of lignin degrader fungus
title_sort genome sequence of the white-rot fungus irpex lacteus f17, a type strain of lignin degrader fungus
topic Short Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5596461/
https://www.ncbi.nlm.nih.gov/pubmed/28919942
http://dx.doi.org/10.1186/s40793-017-0267-x
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