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Chasing after Non-cyanobacterial Nitrogen Fixation in Marine Pelagic Environments

Traditionally, cyanobacterial activity in oceanic photic layers was considered responsible for the marine pelagic dinitrogen (N(2)) fixation. Other potentially N(2)-fixing bacteria and archaea have also been detected in the pelagic water column, however, the activity and importance of these non-cyan...

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Autores principales: Moisander, Pia H., Benavides, Mar, Bonnet, Sophie, Berman-Frank, Ilana, White, Angelicque E., Riemann, Lasse
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5596534/
https://www.ncbi.nlm.nih.gov/pubmed/28943875
http://dx.doi.org/10.3389/fmicb.2017.01736
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author Moisander, Pia H.
Benavides, Mar
Bonnet, Sophie
Berman-Frank, Ilana
White, Angelicque E.
Riemann, Lasse
author_facet Moisander, Pia H.
Benavides, Mar
Bonnet, Sophie
Berman-Frank, Ilana
White, Angelicque E.
Riemann, Lasse
author_sort Moisander, Pia H.
collection PubMed
description Traditionally, cyanobacterial activity in oceanic photic layers was considered responsible for the marine pelagic dinitrogen (N(2)) fixation. Other potentially N(2)-fixing bacteria and archaea have also been detected in the pelagic water column, however, the activity and importance of these non-cyanobacterial diazotrophs (NCDs) remain poorly constrained. In this perspective we summarize the N(2) fixation rates from recently published studies on photic and aphotic layers that have been attributed to NCD activity via parallel molecular measurements, and discuss the status, challenges, and data gaps in estimating non-cyanobacterial N(2) fixation NCNF in the ocean. Rates attributed to NCNF have generally been near the detection limit thus far (<1 nmol N L(−1) d(−1)). Yet, if considering the large volume of the dark ocean, even low rates of NCNF could make a significant contribution to the new nitrogen input to the ocean. The synthesis here shows that nifH transcription data for NCDs have been reported in only a few studies where N(2) fixation rates were detected in the absence of diazotrophic cyanobacteria. In addition, high apparent diversity and regional variability in the NCDs complicate investigations of these communities. Future studies should focus on further investigating impacts of environmental drivers including oxygen, dissolved organic matter, and dissolved inorganic nitrogen on NCNF. Describing the ecology of NCDs and accurately measuring NCNF rates, are critical for a future evaluation of the contribution of NCNF to the marine nitrogen budget.
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spelling pubmed-55965342017-09-22 Chasing after Non-cyanobacterial Nitrogen Fixation in Marine Pelagic Environments Moisander, Pia H. Benavides, Mar Bonnet, Sophie Berman-Frank, Ilana White, Angelicque E. Riemann, Lasse Front Microbiol Microbiology Traditionally, cyanobacterial activity in oceanic photic layers was considered responsible for the marine pelagic dinitrogen (N(2)) fixation. Other potentially N(2)-fixing bacteria and archaea have also been detected in the pelagic water column, however, the activity and importance of these non-cyanobacterial diazotrophs (NCDs) remain poorly constrained. In this perspective we summarize the N(2) fixation rates from recently published studies on photic and aphotic layers that have been attributed to NCD activity via parallel molecular measurements, and discuss the status, challenges, and data gaps in estimating non-cyanobacterial N(2) fixation NCNF in the ocean. Rates attributed to NCNF have generally been near the detection limit thus far (<1 nmol N L(−1) d(−1)). Yet, if considering the large volume of the dark ocean, even low rates of NCNF could make a significant contribution to the new nitrogen input to the ocean. The synthesis here shows that nifH transcription data for NCDs have been reported in only a few studies where N(2) fixation rates were detected in the absence of diazotrophic cyanobacteria. In addition, high apparent diversity and regional variability in the NCDs complicate investigations of these communities. Future studies should focus on further investigating impacts of environmental drivers including oxygen, dissolved organic matter, and dissolved inorganic nitrogen on NCNF. Describing the ecology of NCDs and accurately measuring NCNF rates, are critical for a future evaluation of the contribution of NCNF to the marine nitrogen budget. Frontiers Media S.A. 2017-09-08 /pmc/articles/PMC5596534/ /pubmed/28943875 http://dx.doi.org/10.3389/fmicb.2017.01736 Text en Copyright © 2017 Moisander, Benavides, Bonnet, Berman-Frank, White and Riemann. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Moisander, Pia H.
Benavides, Mar
Bonnet, Sophie
Berman-Frank, Ilana
White, Angelicque E.
Riemann, Lasse
Chasing after Non-cyanobacterial Nitrogen Fixation in Marine Pelagic Environments
title Chasing after Non-cyanobacterial Nitrogen Fixation in Marine Pelagic Environments
title_full Chasing after Non-cyanobacterial Nitrogen Fixation in Marine Pelagic Environments
title_fullStr Chasing after Non-cyanobacterial Nitrogen Fixation in Marine Pelagic Environments
title_full_unstemmed Chasing after Non-cyanobacterial Nitrogen Fixation in Marine Pelagic Environments
title_short Chasing after Non-cyanobacterial Nitrogen Fixation in Marine Pelagic Environments
title_sort chasing after non-cyanobacterial nitrogen fixation in marine pelagic environments
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5596534/
https://www.ncbi.nlm.nih.gov/pubmed/28943875
http://dx.doi.org/10.3389/fmicb.2017.01736
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