Cargando…

Discovery of numerous novel small genes in the intergenic regions of the Escherichia coli O157:H7 Sakai genome

In the past, short protein-coding genes were often disregarded by genome annotation pipelines. Transcriptome sequencing (RNAseq) signals outside of annotated genes have usually been interpreted to indicate either ncRNA or pervasive transcription. Therefore, in addition to the transcriptome, the tran...

Descripción completa

Detalles Bibliográficos
Autores principales:	Hücker, Sarah M., Ardern, Zachary, Goldberg, Tatyana, Schafferhans, Andrea, Bernhofer, Michael, Vestergaard, Gisle, Nelson, Chase W., Schloter, Michael, Rost, Burkhard, Scherer, Siegfried, Neuhaus, Klaus
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2017
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5597208/ https://www.ncbi.nlm.nih.gov/pubmed/28902868 http://dx.doi.org/10.1371/journal.pone.0184119

Ejemplares similares

The Novel Anaerobiosis-Responsive Overlapping Gene ano Is Overlapping Antisense to the Annotated Gene ECs2385 of Escherichia coli O157:H7 Sakai
por: Hücker, Sarah M., et al.
Publicado: (2018)

A novel short L-arginine responsive protein-coding gene (laoB) antiparallel overlapping to a CadC-like transcriptional regulator in Escherichia coli O157:H7 Sakai originated by overprinting
por: Hücker, Sarah M., et al.
Publicado: (2018)

Translatomics combined with transcriptomics and proteomics reveals novel functional, recently evolved orphan genes in Escherichia coli O157:H7 (EHEC)
por: Neuhaus, Klaus, et al.
Publicado: (2016)

Paulo Sakai
Publicado: (2019)

A Novel pH-Regulated, Unusual 603 bp Overlapping Protein Coding Gene pop Is Encoded Antisense to ompA in Escherichia coli O157:H7 (EHEC)
por: Zehentner, Barbara, et al.
Publicado: (2020)

Sakai OAE deployment and management
por: Whitney, Max
Publicado: (2012)

TMbed: transmembrane proteins predicted through language model embeddings
por: Bernhofer, Michael, et al.
Publicado: (2022)

Are Antisense Proteins in Prokaryotes Functional?
por: Ardern, Zachary, et al.
Publicado: (2020)

NLSdb—major update for database of nuclear localization signals and nuclear export signals
por: Bernhofer, Michael, et al.
Publicado: (2018)

Resistance to dryness of Escherichia coli O157:H7 strains from outbreak in Sakai City, Japan, 1996.
por: Iijima, Y, et al.
Publicado: (1998)

Expression and Functional Characterization of Various Chaperon-Usher Fimbriae, Curli Fimbriae, and Type 4 Pili of Enterohemorrhagic Escherichia coli O157:H7 Sakai
por: Elpers, Laura, et al.
Publicado: (2020)

Correcting mistakes in predicting distributions
por: Marot-Lassauzaie, Valérie, et al.
Publicado: (2018)

Physiological Response of Escherichia coli O157:H7 Sakai to Dynamic Changes in Temperature and Water Activity as Experienced during Carcass Chilling
por: King, Thea, et al.
Publicado: (2016)

The novel EHEC gene asa overlaps the TEGT transporter gene in antisense and is regulated by NaCl and growth phase
por: Vanderhaeghen, Sonja, et al.
Publicado: (2018)

Response of Barley Plants to Drought Might Be Associated with the Recruiting of Soil-Borne Endophytes
por: Yang, Luhua, et al.
Publicado: (2020)

Global Genome Response of Escherichia coli O157∶H7 Sakai during Dynamic Changes in Growth Kinetics Induced by an Abrupt Temperature Downshift
por: King, Thea, et al.
Publicado: (2014)

Non-canonical transcriptional start sites in E. coli O157:H7 EDL933 are regulated and appear in surprisingly high numbers
por: Zehentner, Barbara, et al.
Publicado: (2023)

Global Genome Response of Escherichia coli O157∶H7 Sakai during Dynamic Changes in Growth Kinetics Induced by an Abrupt Downshift in Water Activity
por: Kocharunchitt, Chawalit, et al.
Publicado: (2014)

PredictProtein—an open resource for online prediction of protein structural and functional features
por: Yachdav, Guy, et al.
Publicado: (2014)

Spotlight on alternative frame coding: Two long overlapping genes in Pseudomonas aeruginosa are translated and under purifying selection
por: Kreitmeier, Michaela, et al.
Publicado: (2022)

A long-term field experiment demonstrates the influence of tillage on the bacterial potential to produce soil structure-stabilizing agents such as exopolysaccharides and lipopolysaccharides
por: Cania, Barbara, et al.
Publicado: (2019)

Three Novel Antisense Overlapping Genes in E. coli O157:H7 EDL933
por: Graf, Franziska, et al.
Publicado: (2022)

Rediscovery of Orientotlosiishibai Sakai, 1980 (Crustacea, Decapoda, Brachyura, Leucosiidae) in Taiwan
por: Ng, Peter K. L., et al.
Publicado: (2021)

Whole-Transcriptome Analysis of Verocytotoxigenic Escherichia coli O157:H7 (Sakai) Suggests Plant-Species-Specific Metabolic Responses on Exposure to Spinach and Lettuce Extracts
por: Crozier, Louise, et al.
Publicado: (2016)

Transcriptome-Stable Isotope Probing Provides Targeted Functional and Taxonomic Insights Into Microaerobic Pollutant-Degrading Aquifer Microbiota
por: Bradford, Lauren M., et al.
Publicado: (2018)

Corrigendum: Whole-Transcriptome Analysis of Verocytotoxigenic Escherichia coli O157:H7 (Sakai) Suggests Plant-Species-Specific Metabolic Responses on Exposure to Spinach and Lettuce Extracts
por: Crozier, Louise, et al.
Publicado: (2016)

Magnetized Domain Walls in the Deconfined Sakai-Sugimoto Model at Finite Baryon Density
por: Burikham, Piyabut, et al.
Publicado: (2011)

Soil Bacterial Diversity Is Positively Correlated with Decomposition Rates during Early Phases of Maize Litter Decomposition
por: Chiba, Akane, et al.
Publicado: (2021)

Biological factors in the synthetic construction of overlapping genes
por: Wichmann, Stefan, et al.
Publicado: (2021)

The Microbiome of Endophytic, Wood Colonizing Bacteria from Pine Trees as Affected by Pine Wilt Disease
por: Proença, Diogo Neves, et al.
Publicado: (2017)

The Influence of Land Use Intensity on the Plant-Associated Microbiome of Dactylis glomerata L.
por: Estendorfer, Jennifer, et al.
Publicado: (2017)

Reduced microbial potential for the degradation of phenolic compounds in the rhizosphere of apple plantlets grown in soils affected by replant disease
por: Radl, Viviane, et al.
Publicado: (2019)

LocTree2 predicts localization for all domains of life
por: Goldberg, Tatyana, et al.
Publicado: (2012)

Accelerating the Original Profile Kernel
por: Hamp, Tobias, et al.
Publicado: (2013)

Computational prediction shines light on type III secretion origins
por: Goldberg, Tatyana, et al.
Publicado: (2016)

Draft Genome Sequences of Three European Laboratory Derivatives from Enterohemorrhagic Escherichia coli O157:H7 Strain EDL933, Including Two Plasmids
por: Fellner, Lea, et al.
Publicado: (2016)

Embeddings from protein language models predict conservation and variant effects
por: Marquet, Céline, et al.
Publicado: (2021)

Combining multimodal imaging and treatment features improves machine learning‐based prognostic assessment in patients with glioblastoma multiforme
por: Peeken, Jan C., et al.
Publicado: (2018)

Comparison of strand-specific transcriptomes of enterohemorrhagic Escherichia coli O157:H7 EDL933 (EHEC) under eleven different environmental conditions including radish sprouts and cattle feces
por: Landstorfer, Richard, et al.
Publicado: (2014)

Effects of Lutein Supplementation in Japanese Patients with Unilateral Age-Related Macular Degeneration: The Sakai Lutein Study
por: Sawa, Miki, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_0udnhejq3rpldooi9jh4jtaoir