Cargando…
Efficient Application of Continuous Fractional Component Monte Carlo in the Reaction Ensemble
[Image: see text] A new formulation of the Reaction Ensemble Monte Carlo technique (RxMC) combined with the Continuous Fractional Component Monte Carlo method is presented. This method is denoted by serial Rx/CFC. The key ingredient is that fractional molecules of either reactants or reaction produc...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American
Chemical Society
2017
|
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5597954/ https://www.ncbi.nlm.nih.gov/pubmed/28737933 http://dx.doi.org/10.1021/acs.jctc.7b00092 |
_version_ | 1783263804134522880 |
---|---|
author | Poursaeidesfahani, Ali Hens, Remco Rahbari, Ahmadreza Ramdin, Mahinder Dubbeldam, David Vlugt, Thijs J. H. |
author_facet | Poursaeidesfahani, Ali Hens, Remco Rahbari, Ahmadreza Ramdin, Mahinder Dubbeldam, David Vlugt, Thijs J. H. |
author_sort | Poursaeidesfahani, Ali |
collection | PubMed |
description | [Image: see text] A new formulation of the Reaction Ensemble Monte Carlo technique (RxMC) combined with the Continuous Fractional Component Monte Carlo method is presented. This method is denoted by serial Rx/CFC. The key ingredient is that fractional molecules of either reactants or reaction products are present and that chemical reactions always involve fractional molecules. Serial Rx/CFC has the following advantages compared to other approaches: (1) One directly obtains chemical potentials of all reactants and reaction products. Obtained chemical potentials can be used directly as an independent check to ensure that chemical equilibrium is achieved. (2) Independent biasing is applied to the fractional molecules of reactants and reaction products. Therefore, the efficiency of the algorithm is significantly increased, compared to the other approaches. (3) Changes in the maximum scaling parameter of intermolecular interactions can be chosen differently for reactants and reaction products. (4) The number of fractional molecules is reduced. As a proof of principle, our method is tested for Lennard-Jones systems at various pressures and for various chemical reactions. Excellent agreement was found both for average densities and equilibrium mixture compositions computed using serial Rx/CFC, RxMC/CFCMC previously introduced by Rosch and Maginn (Journal of Chemical Theory and Computation, 2011, 7, 269–279), and the conventional RxMC approach. The serial Rx/CFC approach is also tested for the reaction of ammonia synthesis at various temperatures and pressures. Excellent agreement was found between results obtained from serial Rx/CFC, experimental results from literature, and thermodynamic modeling using the Peng–Robinson equation of state. The efficiency of reaction trial moves is improved by a factor of 2 to 3 (depending on the system) compared to the RxMC/CFCMC formulation by Rosch and Maginn. |
format | Online Article Text |
id | pubmed-5597954 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | American
Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-55979542017-09-15 Efficient Application of Continuous Fractional Component Monte Carlo in the Reaction Ensemble Poursaeidesfahani, Ali Hens, Remco Rahbari, Ahmadreza Ramdin, Mahinder Dubbeldam, David Vlugt, Thijs J. H. J Chem Theory Comput [Image: see text] A new formulation of the Reaction Ensemble Monte Carlo technique (RxMC) combined with the Continuous Fractional Component Monte Carlo method is presented. This method is denoted by serial Rx/CFC. The key ingredient is that fractional molecules of either reactants or reaction products are present and that chemical reactions always involve fractional molecules. Serial Rx/CFC has the following advantages compared to other approaches: (1) One directly obtains chemical potentials of all reactants and reaction products. Obtained chemical potentials can be used directly as an independent check to ensure that chemical equilibrium is achieved. (2) Independent biasing is applied to the fractional molecules of reactants and reaction products. Therefore, the efficiency of the algorithm is significantly increased, compared to the other approaches. (3) Changes in the maximum scaling parameter of intermolecular interactions can be chosen differently for reactants and reaction products. (4) The number of fractional molecules is reduced. As a proof of principle, our method is tested for Lennard-Jones systems at various pressures and for various chemical reactions. Excellent agreement was found both for average densities and equilibrium mixture compositions computed using serial Rx/CFC, RxMC/CFCMC previously introduced by Rosch and Maginn (Journal of Chemical Theory and Computation, 2011, 7, 269–279), and the conventional RxMC approach. The serial Rx/CFC approach is also tested for the reaction of ammonia synthesis at various temperatures and pressures. Excellent agreement was found between results obtained from serial Rx/CFC, experimental results from literature, and thermodynamic modeling using the Peng–Robinson equation of state. The efficiency of reaction trial moves is improved by a factor of 2 to 3 (depending on the system) compared to the RxMC/CFCMC formulation by Rosch and Maginn. American Chemical Society 2017-07-24 2017-09-12 /pmc/articles/PMC5597954/ /pubmed/28737933 http://dx.doi.org/10.1021/acs.jctc.7b00092 Text en Copyright © 2017 American Chemical Society This is an open access article published under a Creative Commons Non-Commercial No Derivative Works (CC-BY-NC-ND) Attribution License (http://pubs.acs.org/page/policy/authorchoice_ccbyncnd_termsofuse.html) , which permits copying and redistribution of the article, and creation of adaptations, all for non-commercial purposes. |
spellingShingle | Poursaeidesfahani, Ali Hens, Remco Rahbari, Ahmadreza Ramdin, Mahinder Dubbeldam, David Vlugt, Thijs J. H. Efficient Application of Continuous Fractional Component Monte Carlo in the Reaction Ensemble |
title | Efficient Application of Continuous Fractional Component
Monte Carlo in the Reaction Ensemble |
title_full | Efficient Application of Continuous Fractional Component
Monte Carlo in the Reaction Ensemble |
title_fullStr | Efficient Application of Continuous Fractional Component
Monte Carlo in the Reaction Ensemble |
title_full_unstemmed | Efficient Application of Continuous Fractional Component
Monte Carlo in the Reaction Ensemble |
title_short | Efficient Application of Continuous Fractional Component
Monte Carlo in the Reaction Ensemble |
title_sort | efficient application of continuous fractional component
monte carlo in the reaction ensemble |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5597954/ https://www.ncbi.nlm.nih.gov/pubmed/28737933 http://dx.doi.org/10.1021/acs.jctc.7b00092 |
work_keys_str_mv | AT poursaeidesfahaniali efficientapplicationofcontinuousfractionalcomponentmontecarlointhereactionensemble AT hensremco efficientapplicationofcontinuousfractionalcomponentmontecarlointhereactionensemble AT rahbariahmadreza efficientapplicationofcontinuousfractionalcomponentmontecarlointhereactionensemble AT ramdinmahinder efficientapplicationofcontinuousfractionalcomponentmontecarlointhereactionensemble AT dubbeldamdavid efficientapplicationofcontinuousfractionalcomponentmontecarlointhereactionensemble AT vlugtthijsjh efficientapplicationofcontinuousfractionalcomponentmontecarlointhereactionensemble |