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The eBioKit, a stand-alone educational platform for bioinformatics

Bioinformatics skills have become essential for many research areas; however, the availability of qualified researchers is usually lower than the demand and training to increase the number of able bioinformaticians is an important task for the bioinformatics community. When conducting training or ha...

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Autores principales: Hernández-de-Diego, Rafael, de Villiers, Etienne P., Klingström, Tomas, Gourlé, Hadrien, Conesa, Ana, Bongcam-Rudloff, Erik
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5598936/
https://www.ncbi.nlm.nih.gov/pubmed/28910280
http://dx.doi.org/10.1371/journal.pcbi.1005616
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author Hernández-de-Diego, Rafael
de Villiers, Etienne P.
Klingström, Tomas
Gourlé, Hadrien
Conesa, Ana
Bongcam-Rudloff, Erik
author_facet Hernández-de-Diego, Rafael
de Villiers, Etienne P.
Klingström, Tomas
Gourlé, Hadrien
Conesa, Ana
Bongcam-Rudloff, Erik
author_sort Hernández-de-Diego, Rafael
collection PubMed
description Bioinformatics skills have become essential for many research areas; however, the availability of qualified researchers is usually lower than the demand and training to increase the number of able bioinformaticians is an important task for the bioinformatics community. When conducting training or hands-on tutorials, the lack of control over the analysis tools and repositories often results in undesirable situations during training, as unavailable online tools or version conflicts may delay, complicate, or even prevent the successful completion of a training event. The eBioKit is a stand-alone educational platform that hosts numerous tools and databases for bioinformatics research and allows training to take place in a controlled environment. A key advantage of the eBioKit over other existing teaching solutions is that all the required software and databases are locally installed on the system, significantly reducing the dependence on the internet. Furthermore, the architecture of the eBioKit has demonstrated itself to be an excellent balance between portability and performance, not only making the eBioKit an exceptional educational tool but also providing small research groups with a platform to incorporate bioinformatics analysis in their research. As a result, the eBioKit has formed an integral part of training and research performed by a wide variety of universities and organizations such as the Pan African Bioinformatics Network (H3ABioNet) as part of the initiative Human Heredity and Health in Africa (H3Africa), the Southern Africa Network for Biosciences (SAnBio) initiative, the Biosciences eastern and central Africa (BecA) hub, and the International Glossina Genome Initiative.
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spelling pubmed-55989362017-09-22 The eBioKit, a stand-alone educational platform for bioinformatics Hernández-de-Diego, Rafael de Villiers, Etienne P. Klingström, Tomas Gourlé, Hadrien Conesa, Ana Bongcam-Rudloff, Erik PLoS Comput Biol Education Bioinformatics skills have become essential for many research areas; however, the availability of qualified researchers is usually lower than the demand and training to increase the number of able bioinformaticians is an important task for the bioinformatics community. When conducting training or hands-on tutorials, the lack of control over the analysis tools and repositories often results in undesirable situations during training, as unavailable online tools or version conflicts may delay, complicate, or even prevent the successful completion of a training event. The eBioKit is a stand-alone educational platform that hosts numerous tools and databases for bioinformatics research and allows training to take place in a controlled environment. A key advantage of the eBioKit over other existing teaching solutions is that all the required software and databases are locally installed on the system, significantly reducing the dependence on the internet. Furthermore, the architecture of the eBioKit has demonstrated itself to be an excellent balance between portability and performance, not only making the eBioKit an exceptional educational tool but also providing small research groups with a platform to incorporate bioinformatics analysis in their research. As a result, the eBioKit has formed an integral part of training and research performed by a wide variety of universities and organizations such as the Pan African Bioinformatics Network (H3ABioNet) as part of the initiative Human Heredity and Health in Africa (H3Africa), the Southern Africa Network for Biosciences (SAnBio) initiative, the Biosciences eastern and central Africa (BecA) hub, and the International Glossina Genome Initiative. Public Library of Science 2017-09-14 /pmc/articles/PMC5598936/ /pubmed/28910280 http://dx.doi.org/10.1371/journal.pcbi.1005616 Text en © 2017 Hernández-de-Diego et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Education
Hernández-de-Diego, Rafael
de Villiers, Etienne P.
Klingström, Tomas
Gourlé, Hadrien
Conesa, Ana
Bongcam-Rudloff, Erik
The eBioKit, a stand-alone educational platform for bioinformatics
title The eBioKit, a stand-alone educational platform for bioinformatics
title_full The eBioKit, a stand-alone educational platform for bioinformatics
title_fullStr The eBioKit, a stand-alone educational platform for bioinformatics
title_full_unstemmed The eBioKit, a stand-alone educational platform for bioinformatics
title_short The eBioKit, a stand-alone educational platform for bioinformatics
title_sort ebiokit, a stand-alone educational platform for bioinformatics
topic Education
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5598936/
https://www.ncbi.nlm.nih.gov/pubmed/28910280
http://dx.doi.org/10.1371/journal.pcbi.1005616
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