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Logical gates in actin monomer

We evaluate information processing capacity of a single actin molecule by calculating distributions of logical gates implemented by the molecule via propagating patterns of excitation. We represent a filamentous actin molecule as an excitable automaton network (F-actin automaton). where every atom u...

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Autor principal: Adamatzky, Andrew
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5603530/
https://www.ncbi.nlm.nih.gov/pubmed/28924178
http://dx.doi.org/10.1038/s41598-017-11333-7
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author Adamatzky, Andrew
author_facet Adamatzky, Andrew
author_sort Adamatzky, Andrew
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description We evaluate information processing capacity of a single actin molecule by calculating distributions of logical gates implemented by the molecule via propagating patterns of excitation. We represent a filamentous actin molecule as an excitable automaton network (F-actin automaton). where every atom updates its state depending on states of atoms its connected to with chemical bonds (hard neighbours) and atoms being in physical proximity to the atom (soft neighbours). A resting atom excites if a sum of its excited hard neighbours and a weighted sum of its soft neighbours belong to some specified interval. We demonstrate that F-actin automata implement OR, AND, XOR and AND-NOT gates via interacting patterns of excitation. Gate AND is the most common gate and gate XOR is the rarest. Using the architectures of gates discovered we implement one bit half-adder and controlled-not circuits in the F-actin automata. Speed and space values of the F-actin molecular computers are discussed.
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spelling pubmed-56035302017-09-20 Logical gates in actin monomer Adamatzky, Andrew Sci Rep Article We evaluate information processing capacity of a single actin molecule by calculating distributions of logical gates implemented by the molecule via propagating patterns of excitation. We represent a filamentous actin molecule as an excitable automaton network (F-actin automaton). where every atom updates its state depending on states of atoms its connected to with chemical bonds (hard neighbours) and atoms being in physical proximity to the atom (soft neighbours). A resting atom excites if a sum of its excited hard neighbours and a weighted sum of its soft neighbours belong to some specified interval. We demonstrate that F-actin automata implement OR, AND, XOR and AND-NOT gates via interacting patterns of excitation. Gate AND is the most common gate and gate XOR is the rarest. Using the architectures of gates discovered we implement one bit half-adder and controlled-not circuits in the F-actin automata. Speed and space values of the F-actin molecular computers are discussed. Nature Publishing Group UK 2017-09-18 /pmc/articles/PMC5603530/ /pubmed/28924178 http://dx.doi.org/10.1038/s41598-017-11333-7 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Adamatzky, Andrew
Logical gates in actin monomer
title Logical gates in actin monomer
title_full Logical gates in actin monomer
title_fullStr Logical gates in actin monomer
title_full_unstemmed Logical gates in actin monomer
title_short Logical gates in actin monomer
title_sort logical gates in actin monomer
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5603530/
https://www.ncbi.nlm.nih.gov/pubmed/28924178
http://dx.doi.org/10.1038/s41598-017-11333-7
work_keys_str_mv AT adamatzkyandrew logicalgatesinactinmonomer