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Quantum chemical calculation of electron ionization mass spectra for general organic and inorganic molecules
We introduce a fully stand-alone version of the Quantum Chemistry Electron Ionization Mass Spectra (QCEIMS) program [S. Grimme, Angew. Chem. Int. Ed., 2013, 52, 6306] allowing efficient simulations for molecules composed of elements with atomic numbers up to Z = 86. The recently developed extended t...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Royal Society of Chemistry
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5603848/ https://www.ncbi.nlm.nih.gov/pubmed/28959412 http://dx.doi.org/10.1039/c7sc00601b |
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author | Ásgeirsson, Vilhjálmur Bauer, Christoph A. Grimme, Stefan |
author_facet | Ásgeirsson, Vilhjálmur Bauer, Christoph A. Grimme, Stefan |
author_sort | Ásgeirsson, Vilhjálmur |
collection | PubMed |
description | We introduce a fully stand-alone version of the Quantum Chemistry Electron Ionization Mass Spectra (QCEIMS) program [S. Grimme, Angew. Chem. Int. Ed., 2013, 52, 6306] allowing efficient simulations for molecules composed of elements with atomic numbers up to Z = 86. The recently developed extended tight-binding semi-empirical method GFN-xTB has been combined with QCEIMS, thereby eliminating dependencies on third-party electronic structure software. Furthermore, for reasonable calculations of ionization potentials, as required by the method, a second tight-binding variant, IPEA-xTB, is introduced here. This novel combination of methods allows the automatic, fast and reasonably accurate computation of electron ionization mass spectra for structurally different molecules across the periodic table. In order to validate and inspect the transferability of the method, we perform large-scale simulations for some representative organic, organometallic, and main-group inorganic systems. Theoretical spectra for 23 molecules are compared directly to experimental data taken from standard databases. For the first time, realistic quantum chemistry based EI-MS for organometallic systems like ferrocene or copper(ii)acetylacetonate are presented. Compared to previously used semiempirical methods, GFN-xTB is faster, more robust, and yields overall higher quality spectra. The partially analysed theoretical reaction and fragmentation mechanisms are chemically reasonable and reveal in unprecedented detail the extreme complexity of high energy gas phase ion chemistry including complicated rearrangement reactions prior to dissociation. |
format | Online Article Text |
id | pubmed-5603848 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Royal Society of Chemistry |
record_format | MEDLINE/PubMed |
spelling | pubmed-56038482017-09-28 Quantum chemical calculation of electron ionization mass spectra for general organic and inorganic molecules Ásgeirsson, Vilhjálmur Bauer, Christoph A. Grimme, Stefan Chem Sci Chemistry We introduce a fully stand-alone version of the Quantum Chemistry Electron Ionization Mass Spectra (QCEIMS) program [S. Grimme, Angew. Chem. Int. Ed., 2013, 52, 6306] allowing efficient simulations for molecules composed of elements with atomic numbers up to Z = 86. The recently developed extended tight-binding semi-empirical method GFN-xTB has been combined with QCEIMS, thereby eliminating dependencies on third-party electronic structure software. Furthermore, for reasonable calculations of ionization potentials, as required by the method, a second tight-binding variant, IPEA-xTB, is introduced here. This novel combination of methods allows the automatic, fast and reasonably accurate computation of electron ionization mass spectra for structurally different molecules across the periodic table. In order to validate and inspect the transferability of the method, we perform large-scale simulations for some representative organic, organometallic, and main-group inorganic systems. Theoretical spectra for 23 molecules are compared directly to experimental data taken from standard databases. For the first time, realistic quantum chemistry based EI-MS for organometallic systems like ferrocene or copper(ii)acetylacetonate are presented. Compared to previously used semiempirical methods, GFN-xTB is faster, more robust, and yields overall higher quality spectra. The partially analysed theoretical reaction and fragmentation mechanisms are chemically reasonable and reveal in unprecedented detail the extreme complexity of high energy gas phase ion chemistry including complicated rearrangement reactions prior to dissociation. Royal Society of Chemistry 2017-07-01 2017-05-05 /pmc/articles/PMC5603848/ /pubmed/28959412 http://dx.doi.org/10.1039/c7sc00601b Text en This journal is © The Royal Society of Chemistry 2017 http://creativecommons.org/licenses/by/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution 3.0 Unported License (http://creativecommons.org/licenses/by/3.0/) which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Chemistry Ásgeirsson, Vilhjálmur Bauer, Christoph A. Grimme, Stefan Quantum chemical calculation of electron ionization mass spectra for general organic and inorganic molecules |
title | Quantum chemical calculation of electron ionization mass spectra for general organic and inorganic molecules
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title_full | Quantum chemical calculation of electron ionization mass spectra for general organic and inorganic molecules
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title_fullStr | Quantum chemical calculation of electron ionization mass spectra for general organic and inorganic molecules
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title_full_unstemmed | Quantum chemical calculation of electron ionization mass spectra for general organic and inorganic molecules
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title_short | Quantum chemical calculation of electron ionization mass spectra for general organic and inorganic molecules
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title_sort | quantum chemical calculation of electron ionization mass spectra for general organic and inorganic molecules |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5603848/ https://www.ncbi.nlm.nih.gov/pubmed/28959412 http://dx.doi.org/10.1039/c7sc00601b |
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