cophesim: a comprehensive phenotype simulator for testing novel association methods

Simulation is important in evaluating novel methods when input data is not easily obtainable or specific assumptions are needed. We present cophesim, a software to add the phenotype to generated genotype data prepared with a genetic simulator. The output of cophesim can be used as a direct input for...

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Detalles Bibliográficos
Autores principales: Zhbannikov, Ilya Y., Arbeev, Konstantin G., Yashin, Anatoliy I.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000Research 2017
Materias:
Software Tool Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5605948/
https://www.ncbi.nlm.nih.gov/pubmed/28979766
http://dx.doi.org/10.12688/f1000research.11968.1
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author Zhbannikov, Ilya Y.
Arbeev, Konstantin G.
Yashin, Anatoliy I.
author_facet Zhbannikov, Ilya Y.
Arbeev, Konstantin G.
Yashin, Anatoliy I.
author_sort Zhbannikov, Ilya Y.
collection PubMed
description Simulation is important in evaluating novel methods when input data is not easily obtainable or specific assumptions are needed. We present cophesim, a software to add the phenotype to generated genotype data prepared with a genetic simulator. The output of cophesim can be used as a direct input for different genome wide association study tools. cophesim is available from https://bitbucket.org/izhbannikov/cophesim.
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spelling pubmed-56059482017-10-03 cophesim: a comprehensive phenotype simulator for testing novel association methods Zhbannikov, Ilya Y. Arbeev, Konstantin G. Yashin, Anatoliy I. F1000Res Software Tool Article Simulation is important in evaluating novel methods when input data is not easily obtainable or specific assumptions are needed. We present cophesim, a software to add the phenotype to generated genotype data prepared with a genetic simulator. The output of cophesim can be used as a direct input for different genome wide association study tools. cophesim is available from https://bitbucket.org/izhbannikov/cophesim. F1000Research 2017-08-01 /pmc/articles/PMC5605948/ /pubmed/28979766 http://dx.doi.org/10.12688/f1000research.11968.1 Text en Copyright: © 2017 Zhbannikov IY et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Software Tool Article
Zhbannikov, Ilya Y.
Arbeev, Konstantin G.
Yashin, Anatoliy I.
cophesim: a comprehensive phenotype simulator for testing novel association methods
title cophesim: a comprehensive phenotype simulator for testing novel association methods
title_full cophesim: a comprehensive phenotype simulator for testing novel association methods
title_fullStr cophesim: a comprehensive phenotype simulator for testing novel association methods
title_full_unstemmed cophesim: a comprehensive phenotype simulator for testing novel association methods
title_short cophesim: a comprehensive phenotype simulator for testing novel association methods
title_sort cophesim: a comprehensive phenotype simulator for testing novel association methods
topic Software Tool Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5605948/
https://www.ncbi.nlm.nih.gov/pubmed/28979766
http://dx.doi.org/10.12688/f1000research.11968.1
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AT yashinanatoliyi cophesimacomprehensivephenotypesimulatorfortestingnovelassociationmethods

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