Viewing RNA-seq data on the entire human genome

RNA-Seq Viewer is a web application that enables users to visualize genome-wide expression data from NCBI’s Sequence Read Archive (SRA) and Gene Expression Omnibus (GEO) databases. The application prototype was created by a small team during a three-day hackathon facilitated by NCBI at Brandeis Univ...

Descripción completa

Detalles Bibliográficos
Autores principales: Weitz, Eric M., Pantano, Lorena, Zhu, Jingzhi, Upton, Bennett, Busby, Ben
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000Research 2017
Materias:
Software Tool Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5605993/
https://www.ncbi.nlm.nih.gov/pubmed/28979763
http://dx.doi.org/10.12688/f1000research.9762.1
Descripción
Sumario:RNA-Seq Viewer is a web application that enables users to visualize genome-wide expression data from NCBI’s Sequence Read Archive (SRA) and Gene Expression Omnibus (GEO) databases. The application prototype was created by a small team during a three-day hackathon facilitated by NCBI at Brandeis University. The backend data pipeline was developed and deployed on a shared AWS EC2 instance. Source code is available at https://github.com/NCBI-Hackathons/rnaseqview.

Ejemplares similares