Isolation of Novel Bacteria Including Rarely Cultivated Phyla, Acidobacteria and Verrucomicrobia, from the Roots of Emergent Plants by Simple Culturing Method

A number of novel bacteria including members of rarely cultivated phyla, Acidobacteria and Verrucomicrobia, were successfully isolated from the roots of two emergent plants, Iris pseudacorus and Scirpus juncoides, by a simple culturing method. A total of 47.1% (66 strains) for I. pseudacorus and 42....

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Autores principales: Tanaka, Yasuhiro, Matsuzawa, Hiroaki, Tamaki, Hideyuki, Tagawa, Masahiro, Toyama, Tadashi, Kamagata, Yoichi, Mori, Kazuhiro
Formato: Online Artículo Texto
Lenguaje:English
Publicado: the Japanese Society of Microbial Ecology (JSME)/the Japanese Society of Soil Microbiology (JSSM)/the Taiwan Society of Microbial Ecology (TSME)/the Japanese Society of Plant Microbe Interactions (JSPMI) 2017
Materias:
Short Communication
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5606700/
https://www.ncbi.nlm.nih.gov/pubmed/28740039
http://dx.doi.org/10.1264/jsme2.ME17027
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author Tanaka, Yasuhiro
Matsuzawa, Hiroaki
Tamaki, Hideyuki
Tagawa, Masahiro
Toyama, Tadashi
Kamagata, Yoichi
Mori, Kazuhiro
author_facet Tanaka, Yasuhiro
Matsuzawa, Hiroaki
Tamaki, Hideyuki
Tagawa, Masahiro
Toyama, Tadashi
Kamagata, Yoichi
Mori, Kazuhiro
author_sort Tanaka, Yasuhiro
collection PubMed
description A number of novel bacteria including members of rarely cultivated phyla, Acidobacteria and Verrucomicrobia, were successfully isolated from the roots of two emergent plants, Iris pseudacorus and Scirpus juncoides, by a simple culturing method. A total of 47.1% (66 strains) for I. pseudacorus and 42.1% (59 strains) for S. juncoides of all isolates (140 strains from each sample) were phylogenetically novel. Furthermore, Acidobacteria and Verrucomicrobia occupied 10.7% (15 strains) and 2.9% (4 strains) of I. pseudacorus isolates, and 2.1% (3 strains) and 3.6% (5 strains) of S. juncoides isolates, respectively, indicating that plant roots are attractive sources for isolating rarely cultivated microbes.
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spelling pubmed-56067002017-09-25 Isolation of Novel Bacteria Including Rarely Cultivated Phyla, Acidobacteria and Verrucomicrobia, from the Roots of Emergent Plants by Simple Culturing Method Tanaka, Yasuhiro Matsuzawa, Hiroaki Tamaki, Hideyuki Tagawa, Masahiro Toyama, Tadashi Kamagata, Yoichi Mori, Kazuhiro Microbes Environ Short Communication A number of novel bacteria including members of rarely cultivated phyla, Acidobacteria and Verrucomicrobia, were successfully isolated from the roots of two emergent plants, Iris pseudacorus and Scirpus juncoides, by a simple culturing method. A total of 47.1% (66 strains) for I. pseudacorus and 42.1% (59 strains) for S. juncoides of all isolates (140 strains from each sample) were phylogenetically novel. Furthermore, Acidobacteria and Verrucomicrobia occupied 10.7% (15 strains) and 2.9% (4 strains) of I. pseudacorus isolates, and 2.1% (3 strains) and 3.6% (5 strains) of S. juncoides isolates, respectively, indicating that plant roots are attractive sources for isolating rarely cultivated microbes. the Japanese Society of Microbial Ecology (JSME)/the Japanese Society of Soil Microbiology (JSSM)/the Taiwan Society of Microbial Ecology (TSME)/the Japanese Society of Plant Microbe Interactions (JSPMI) 2017-09 2017-09-27 /pmc/articles/PMC5606700/ /pubmed/28740039 http://dx.doi.org/10.1264/jsme2.ME17027 Text en Copyright © 2017 by Japanese Society of Microbial Ecology / Japanese Society of Soil Microbiology / Taiwan Society of Microbial Ecology / Japanese Society of Plant Microbe Interactions. http://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Communication
Tanaka, Yasuhiro
Matsuzawa, Hiroaki
Tamaki, Hideyuki
Tagawa, Masahiro
Toyama, Tadashi
Kamagata, Yoichi
Mori, Kazuhiro
Isolation of Novel Bacteria Including Rarely Cultivated Phyla, Acidobacteria and Verrucomicrobia, from the Roots of Emergent Plants by Simple Culturing Method
title Isolation of Novel Bacteria Including Rarely Cultivated Phyla, Acidobacteria and Verrucomicrobia, from the Roots of Emergent Plants by Simple Culturing Method
title_full Isolation of Novel Bacteria Including Rarely Cultivated Phyla, Acidobacteria and Verrucomicrobia, from the Roots of Emergent Plants by Simple Culturing Method
title_fullStr Isolation of Novel Bacteria Including Rarely Cultivated Phyla, Acidobacteria and Verrucomicrobia, from the Roots of Emergent Plants by Simple Culturing Method
title_full_unstemmed Isolation of Novel Bacteria Including Rarely Cultivated Phyla, Acidobacteria and Verrucomicrobia, from the Roots of Emergent Plants by Simple Culturing Method
title_short Isolation of Novel Bacteria Including Rarely Cultivated Phyla, Acidobacteria and Verrucomicrobia, from the Roots of Emergent Plants by Simple Culturing Method
title_sort isolation of novel bacteria including rarely cultivated phyla, acidobacteria and verrucomicrobia, from the roots of emergent plants by simple culturing method
topic Short Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5606700/
https://www.ncbi.nlm.nih.gov/pubmed/28740039
http://dx.doi.org/10.1264/jsme2.ME17027
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