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Barcoding snakeheads (Teleostei, Channidae) revisited: Discovering greater species diversity and resolving perpetuated taxonomic confusions

Snakehead fishes of the family Channidae are predatory freshwater teleosts from Africa and Asia comprising 38 valid species. Snakeheads are important food fishes (aquaculture, live food trade) and have been introduced widely with several species becoming highly invasive. A channid barcode library wa...

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Autores principales: Conte-Grand, Cecilia, Britz, Ralf, Dahanukar, Neelesh, Raghavan, Rajeev, Pethiyagoda, Rohan, Tan, Heok Hui, Hadiaty, Renny K., Yaakob, Norsham S., Rüber, Lukas
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5606936/
https://www.ncbi.nlm.nih.gov/pubmed/28931084
http://dx.doi.org/10.1371/journal.pone.0184017
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author Conte-Grand, Cecilia
Britz, Ralf
Dahanukar, Neelesh
Raghavan, Rajeev
Pethiyagoda, Rohan
Tan, Heok Hui
Hadiaty, Renny K.
Yaakob, Norsham S.
Rüber, Lukas
author_facet Conte-Grand, Cecilia
Britz, Ralf
Dahanukar, Neelesh
Raghavan, Rajeev
Pethiyagoda, Rohan
Tan, Heok Hui
Hadiaty, Renny K.
Yaakob, Norsham S.
Rüber, Lukas
author_sort Conte-Grand, Cecilia
collection PubMed
description Snakehead fishes of the family Channidae are predatory freshwater teleosts from Africa and Asia comprising 38 valid species. Snakeheads are important food fishes (aquaculture, live food trade) and have been introduced widely with several species becoming highly invasive. A channid barcode library was recently assembled by Serrao and co-workers to better detect and identify potential and established invasive snakehead species outside their native range. Comparing our own recent phylogenetic results of this taxonomically confusing group with those previously reported revealed several inconsistencies that prompted us to expand and improve on previous studies. By generating 343 novel snakehead coxI sequences and combining them with an additional 434 coxI sequences from GenBank we highlight several problems with previous efforts towards the assembly of a snakehead reference barcode library. We found that 16.3% of the channid coxI sequences deposited in GenBank are based on misidentifications. With the inclusion of our own data we were, however, able to solve these cases of perpetuated taxonomic confusion. Different species delimitation approaches we employed (BIN, GMYC, and PTP) were congruent in suggesting a potentially much higher species diversity within snakeheads than currently recognized. In total, 90 BINs were recovered and within a total of 15 currently recognized species multiple BINs were identified. This higher species diversity is mostly due to either the incorporation of undescribed, narrow range, endemics from the Eastern Himalaya biodiversity hotspot or the incorporation of several widespread species characterized by deep genetic splits between geographically well-defined lineages. In the latter case, over-lumping in the past has deflated the actual species numbers. Further integrative approaches are clearly needed for providing a better taxonomic understanding of snakehead diversity, new species descriptions and taxonomic revisions of the group.
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spelling pubmed-56069362017-10-09 Barcoding snakeheads (Teleostei, Channidae) revisited: Discovering greater species diversity and resolving perpetuated taxonomic confusions Conte-Grand, Cecilia Britz, Ralf Dahanukar, Neelesh Raghavan, Rajeev Pethiyagoda, Rohan Tan, Heok Hui Hadiaty, Renny K. Yaakob, Norsham S. Rüber, Lukas PLoS One Research Article Snakehead fishes of the family Channidae are predatory freshwater teleosts from Africa and Asia comprising 38 valid species. Snakeheads are important food fishes (aquaculture, live food trade) and have been introduced widely with several species becoming highly invasive. A channid barcode library was recently assembled by Serrao and co-workers to better detect and identify potential and established invasive snakehead species outside their native range. Comparing our own recent phylogenetic results of this taxonomically confusing group with those previously reported revealed several inconsistencies that prompted us to expand and improve on previous studies. By generating 343 novel snakehead coxI sequences and combining them with an additional 434 coxI sequences from GenBank we highlight several problems with previous efforts towards the assembly of a snakehead reference barcode library. We found that 16.3% of the channid coxI sequences deposited in GenBank are based on misidentifications. With the inclusion of our own data we were, however, able to solve these cases of perpetuated taxonomic confusion. Different species delimitation approaches we employed (BIN, GMYC, and PTP) were congruent in suggesting a potentially much higher species diversity within snakeheads than currently recognized. In total, 90 BINs were recovered and within a total of 15 currently recognized species multiple BINs were identified. This higher species diversity is mostly due to either the incorporation of undescribed, narrow range, endemics from the Eastern Himalaya biodiversity hotspot or the incorporation of several widespread species characterized by deep genetic splits between geographically well-defined lineages. In the latter case, over-lumping in the past has deflated the actual species numbers. Further integrative approaches are clearly needed for providing a better taxonomic understanding of snakehead diversity, new species descriptions and taxonomic revisions of the group. Public Library of Science 2017-09-20 /pmc/articles/PMC5606936/ /pubmed/28931084 http://dx.doi.org/10.1371/journal.pone.0184017 Text en © 2017 Conte-Grand et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Conte-Grand, Cecilia
Britz, Ralf
Dahanukar, Neelesh
Raghavan, Rajeev
Pethiyagoda, Rohan
Tan, Heok Hui
Hadiaty, Renny K.
Yaakob, Norsham S.
Rüber, Lukas
Barcoding snakeheads (Teleostei, Channidae) revisited: Discovering greater species diversity and resolving perpetuated taxonomic confusions
title Barcoding snakeheads (Teleostei, Channidae) revisited: Discovering greater species diversity and resolving perpetuated taxonomic confusions
title_full Barcoding snakeheads (Teleostei, Channidae) revisited: Discovering greater species diversity and resolving perpetuated taxonomic confusions
title_fullStr Barcoding snakeheads (Teleostei, Channidae) revisited: Discovering greater species diversity and resolving perpetuated taxonomic confusions
title_full_unstemmed Barcoding snakeheads (Teleostei, Channidae) revisited: Discovering greater species diversity and resolving perpetuated taxonomic confusions
title_short Barcoding snakeheads (Teleostei, Channidae) revisited: Discovering greater species diversity and resolving perpetuated taxonomic confusions
title_sort barcoding snakeheads (teleostei, channidae) revisited: discovering greater species diversity and resolving perpetuated taxonomic confusions
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5606936/
https://www.ncbi.nlm.nih.gov/pubmed/28931084
http://dx.doi.org/10.1371/journal.pone.0184017
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