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Geochemical and Microbial Community Attributes in Relation to Hyporheic Zone Geological Facies
The hyporheic zone (HZ) is the active ecotone between the surface stream and groundwater, where exchanges of nutrients and organic carbon have been shown to stimulate microbial activity and transformations of carbon and nitrogen. To examine the relationship between sediment texture, biogeochemistry,...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5607297/ https://www.ncbi.nlm.nih.gov/pubmed/28931901 http://dx.doi.org/10.1038/s41598-017-12275-w |
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author | Hou, Z. Nelson, W. C. Stegen, J. C. Murray, C. J. Arntzen, E. Crump, A. R. Kennedy, D. W. Perkins, M. C. Scheibe, T. D. Fredrickson, J. K. Zachara, J. M. |
author_facet | Hou, Z. Nelson, W. C. Stegen, J. C. Murray, C. J. Arntzen, E. Crump, A. R. Kennedy, D. W. Perkins, M. C. Scheibe, T. D. Fredrickson, J. K. Zachara, J. M. |
author_sort | Hou, Z. |
collection | PubMed |
description | The hyporheic zone (HZ) is the active ecotone between the surface stream and groundwater, where exchanges of nutrients and organic carbon have been shown to stimulate microbial activity and transformations of carbon and nitrogen. To examine the relationship between sediment texture, biogeochemistry, and biological activity in the Columbia River HZ, the grain size distributions for sediment samples were characterized to define geological facies, and the relationships among physical properties of the facies, physicochemical attributes of the local environment, and the structure and activity of associated microbial communities were examined. Mud and sand content and the presence of microbial heterotrophic and nitrifying communities partially explained the variability in many biogeochemical attributes such as C:N ratio and %TOC. Microbial community analysis revealed a high relative abundance of putative ammonia-oxidizing Thaumarchaeota and nitrite-oxidizing Nitrospirae. Network analysis showed negative relationships between sets of co-varying organisms and sand and mud contents, and positive relationships with total organic carbon. Our results indicate grain size distribution is a good predictor of biogeochemical properties, and that subsets of the overall microbial community respond to different sediment texture. Relationships between facies and hydrobiogeochemical properties enable facies-based conditional simulation/mapping of these properties to inform multiscale modeling of hyporheic exchange and biogeochemical processes. |
format | Online Article Text |
id | pubmed-5607297 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-56072972017-09-24 Geochemical and Microbial Community Attributes in Relation to Hyporheic Zone Geological Facies Hou, Z. Nelson, W. C. Stegen, J. C. Murray, C. J. Arntzen, E. Crump, A. R. Kennedy, D. W. Perkins, M. C. Scheibe, T. D. Fredrickson, J. K. Zachara, J. M. Sci Rep Article The hyporheic zone (HZ) is the active ecotone between the surface stream and groundwater, where exchanges of nutrients and organic carbon have been shown to stimulate microbial activity and transformations of carbon and nitrogen. To examine the relationship between sediment texture, biogeochemistry, and biological activity in the Columbia River HZ, the grain size distributions for sediment samples were characterized to define geological facies, and the relationships among physical properties of the facies, physicochemical attributes of the local environment, and the structure and activity of associated microbial communities were examined. Mud and sand content and the presence of microbial heterotrophic and nitrifying communities partially explained the variability in many biogeochemical attributes such as C:N ratio and %TOC. Microbial community analysis revealed a high relative abundance of putative ammonia-oxidizing Thaumarchaeota and nitrite-oxidizing Nitrospirae. Network analysis showed negative relationships between sets of co-varying organisms and sand and mud contents, and positive relationships with total organic carbon. Our results indicate grain size distribution is a good predictor of biogeochemical properties, and that subsets of the overall microbial community respond to different sediment texture. Relationships between facies and hydrobiogeochemical properties enable facies-based conditional simulation/mapping of these properties to inform multiscale modeling of hyporheic exchange and biogeochemical processes. Nature Publishing Group UK 2017-09-20 /pmc/articles/PMC5607297/ /pubmed/28931901 http://dx.doi.org/10.1038/s41598-017-12275-w Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Hou, Z. Nelson, W. C. Stegen, J. C. Murray, C. J. Arntzen, E. Crump, A. R. Kennedy, D. W. Perkins, M. C. Scheibe, T. D. Fredrickson, J. K. Zachara, J. M. Geochemical and Microbial Community Attributes in Relation to Hyporheic Zone Geological Facies |
title | Geochemical and Microbial Community Attributes in Relation to Hyporheic Zone Geological Facies |
title_full | Geochemical and Microbial Community Attributes in Relation to Hyporheic Zone Geological Facies |
title_fullStr | Geochemical and Microbial Community Attributes in Relation to Hyporheic Zone Geological Facies |
title_full_unstemmed | Geochemical and Microbial Community Attributes in Relation to Hyporheic Zone Geological Facies |
title_short | Geochemical and Microbial Community Attributes in Relation to Hyporheic Zone Geological Facies |
title_sort | geochemical and microbial community attributes in relation to hyporheic zone geological facies |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5607297/ https://www.ncbi.nlm.nih.gov/pubmed/28931901 http://dx.doi.org/10.1038/s41598-017-12275-w |
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