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Grading of invasive breast carcinoma through Grassmannian VLAD encoding

In this paper we address the problem of automated grading of invasive breast carcinoma through the encoding of histological images as VLAD (Vector of Locally Aggregated Descriptors) representations on the Grassmann manifold. The proposed method considers each image as a set of multidimensional spati...

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Autores principales: Dimitropoulos, Kosmas, Barmpoutis, Panagiotis, Zioga, Christina, Kamas, Athanasios, Patsiaoura, Kalliopi, Grammalidis, Nikos
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5608317/
https://www.ncbi.nlm.nih.gov/pubmed/28934283
http://dx.doi.org/10.1371/journal.pone.0185110
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author Dimitropoulos, Kosmas
Barmpoutis, Panagiotis
Zioga, Christina
Kamas, Athanasios
Patsiaoura, Kalliopi
Grammalidis, Nikos
author_facet Dimitropoulos, Kosmas
Barmpoutis, Panagiotis
Zioga, Christina
Kamas, Athanasios
Patsiaoura, Kalliopi
Grammalidis, Nikos
author_sort Dimitropoulos, Kosmas
collection PubMed
description In this paper we address the problem of automated grading of invasive breast carcinoma through the encoding of histological images as VLAD (Vector of Locally Aggregated Descriptors) representations on the Grassmann manifold. The proposed method considers each image as a set of multidimensional spatially-evolving signals that can be efficiently modeled through a higher-order linear dynamical systems analysis. Subsequently, each H&E (Hematoxylin and Eosin) stained breast cancer histological image is represented as a cloud of points on the Grassmann manifold, while a vector representation approach is applied aiming to aggregate the Grassmannian points based on a locality criterion on the manifold. To evaluate the efficiency of the proposed methodology, two datasets with different characteristics were used. More specifically, we created a new medium-sized dataset consisting of 300 annotated images (collected from 21 patients) of grades 1, 2 and 3, while we also provide experimental results using a large dataset, namely BreaKHis, containing 7,909 breast cancer histological images, collected from 82 patients, of both benign and malignant cases. Experimental results have shown that the proposed method outperforms a number of state of the art approaches providing average classification rates of 95.8% and 91.38% with our dataset and the BreaKHis dataset, respectively.
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spelling pubmed-56083172017-10-09 Grading of invasive breast carcinoma through Grassmannian VLAD encoding Dimitropoulos, Kosmas Barmpoutis, Panagiotis Zioga, Christina Kamas, Athanasios Patsiaoura, Kalliopi Grammalidis, Nikos PLoS One Research Article In this paper we address the problem of automated grading of invasive breast carcinoma through the encoding of histological images as VLAD (Vector of Locally Aggregated Descriptors) representations on the Grassmann manifold. The proposed method considers each image as a set of multidimensional spatially-evolving signals that can be efficiently modeled through a higher-order linear dynamical systems analysis. Subsequently, each H&E (Hematoxylin and Eosin) stained breast cancer histological image is represented as a cloud of points on the Grassmann manifold, while a vector representation approach is applied aiming to aggregate the Grassmannian points based on a locality criterion on the manifold. To evaluate the efficiency of the proposed methodology, two datasets with different characteristics were used. More specifically, we created a new medium-sized dataset consisting of 300 annotated images (collected from 21 patients) of grades 1, 2 and 3, while we also provide experimental results using a large dataset, namely BreaKHis, containing 7,909 breast cancer histological images, collected from 82 patients, of both benign and malignant cases. Experimental results have shown that the proposed method outperforms a number of state of the art approaches providing average classification rates of 95.8% and 91.38% with our dataset and the BreaKHis dataset, respectively. Public Library of Science 2017-09-21 /pmc/articles/PMC5608317/ /pubmed/28934283 http://dx.doi.org/10.1371/journal.pone.0185110 Text en © 2017 Dimitropoulos et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Dimitropoulos, Kosmas
Barmpoutis, Panagiotis
Zioga, Christina
Kamas, Athanasios
Patsiaoura, Kalliopi
Grammalidis, Nikos
Grading of invasive breast carcinoma through Grassmannian VLAD encoding
title Grading of invasive breast carcinoma through Grassmannian VLAD encoding
title_full Grading of invasive breast carcinoma through Grassmannian VLAD encoding
title_fullStr Grading of invasive breast carcinoma through Grassmannian VLAD encoding
title_full_unstemmed Grading of invasive breast carcinoma through Grassmannian VLAD encoding
title_short Grading of invasive breast carcinoma through Grassmannian VLAD encoding
title_sort grading of invasive breast carcinoma through grassmannian vlad encoding
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5608317/
https://www.ncbi.nlm.nih.gov/pubmed/28934283
http://dx.doi.org/10.1371/journal.pone.0185110
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