Cargando…
Impact of Altering Various Image Parameters on Human Epidermal Growth Factor Receptor 2 Image Analysis Data Quality
INTRODUCTION: The quality of data obtained from image analysis can be directly affected by several preanalytical (e.g., staining, image acquisition), analytical (e.g., algorithm, region of interest [ROI]), and postanalytical (e.g., computer processing) variables. Whole-slide scanners generate digita...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Medknow Publications & Media Pvt Ltd
2017
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5609390/ https://www.ncbi.nlm.nih.gov/pubmed/28966838 http://dx.doi.org/10.4103/jpi.jpi_46_17 |
_version_ | 1783265603892543488 |
---|---|
author | Pantanowitz, Liron Liu, Chi Huang, Yue Guo, Huazhang Rohde, Gustavo K. |
author_facet | Pantanowitz, Liron Liu, Chi Huang, Yue Guo, Huazhang Rohde, Gustavo K. |
author_sort | Pantanowitz, Liron |
collection | PubMed |
description | INTRODUCTION: The quality of data obtained from image analysis can be directly affected by several preanalytical (e.g., staining, image acquisition), analytical (e.g., algorithm, region of interest [ROI]), and postanalytical (e.g., computer processing) variables. Whole-slide scanners generate digital images that may vary depending on the type of scanner and device settings. Our goal was to evaluate the impact of altering brightness, contrast, compression, and blurring on image analysis data quality. METHODS: Slides from 55 patients with invasive breast carcinoma were digitized to include a spectrum of human epidermal growth factor receptor 2 (HER2) scores analyzed with Visiopharm (30 cases with score 0, 10 with 1+, 5 with 2+, and 10 with 3+). For all images, an ROI was selected and four parameters (brightness, contrast, JPEG2000 compression, out-of-focus blurring) then serially adjusted. HER2 scores were obtained for each altered image. RESULTS: HER2 scores decreased with increased illumination, higher compression ratios, and increased blurring. HER2 scores increased with greater contrast. Cases with HER2 score 0 were least affected by image adjustments. CONCLUSION: This experiment shows that variations in image brightness, contrast, compression, and blurring can have major influences on image analysis results. Such changes can result in under- or over-scoring with image algorithms. Standardization of image analysis is recommended to minimize the undesirable impact such variations may have on data output. |
format | Online Article Text |
id | pubmed-5609390 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Medknow Publications & Media Pvt Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-56093902017-09-29 Impact of Altering Various Image Parameters on Human Epidermal Growth Factor Receptor 2 Image Analysis Data Quality Pantanowitz, Liron Liu, Chi Huang, Yue Guo, Huazhang Rohde, Gustavo K. J Pathol Inform Original Article INTRODUCTION: The quality of data obtained from image analysis can be directly affected by several preanalytical (e.g., staining, image acquisition), analytical (e.g., algorithm, region of interest [ROI]), and postanalytical (e.g., computer processing) variables. Whole-slide scanners generate digital images that may vary depending on the type of scanner and device settings. Our goal was to evaluate the impact of altering brightness, contrast, compression, and blurring on image analysis data quality. METHODS: Slides from 55 patients with invasive breast carcinoma were digitized to include a spectrum of human epidermal growth factor receptor 2 (HER2) scores analyzed with Visiopharm (30 cases with score 0, 10 with 1+, 5 with 2+, and 10 with 3+). For all images, an ROI was selected and four parameters (brightness, contrast, JPEG2000 compression, out-of-focus blurring) then serially adjusted. HER2 scores were obtained for each altered image. RESULTS: HER2 scores decreased with increased illumination, higher compression ratios, and increased blurring. HER2 scores increased with greater contrast. Cases with HER2 score 0 were least affected by image adjustments. CONCLUSION: This experiment shows that variations in image brightness, contrast, compression, and blurring can have major influences on image analysis results. Such changes can result in under- or over-scoring with image algorithms. Standardization of image analysis is recommended to minimize the undesirable impact such variations may have on data output. Medknow Publications & Media Pvt Ltd 2017-09-07 /pmc/articles/PMC5609390/ /pubmed/28966838 http://dx.doi.org/10.4103/jpi.jpi_46_17 Text en Copyright: © 2017 Journal of Pathology Informatics http://creativecommons.org/licenses/by-nc-sa/3.0 This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-ShareAlike 3.0 License, which allows others to remix, tweak, and build upon the work non-commercially, as long as the author is credited and the new creations are licensed under the identical terms. |
spellingShingle | Original Article Pantanowitz, Liron Liu, Chi Huang, Yue Guo, Huazhang Rohde, Gustavo K. Impact of Altering Various Image Parameters on Human Epidermal Growth Factor Receptor 2 Image Analysis Data Quality |
title | Impact of Altering Various Image Parameters on Human Epidermal Growth Factor Receptor 2 Image Analysis Data Quality |
title_full | Impact of Altering Various Image Parameters on Human Epidermal Growth Factor Receptor 2 Image Analysis Data Quality |
title_fullStr | Impact of Altering Various Image Parameters on Human Epidermal Growth Factor Receptor 2 Image Analysis Data Quality |
title_full_unstemmed | Impact of Altering Various Image Parameters on Human Epidermal Growth Factor Receptor 2 Image Analysis Data Quality |
title_short | Impact of Altering Various Image Parameters on Human Epidermal Growth Factor Receptor 2 Image Analysis Data Quality |
title_sort | impact of altering various image parameters on human epidermal growth factor receptor 2 image analysis data quality |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5609390/ https://www.ncbi.nlm.nih.gov/pubmed/28966838 http://dx.doi.org/10.4103/jpi.jpi_46_17 |
work_keys_str_mv | AT pantanowitzliron impactofalteringvariousimageparametersonhumanepidermalgrowthfactorreceptor2imageanalysisdataquality AT liuchi impactofalteringvariousimageparametersonhumanepidermalgrowthfactorreceptor2imageanalysisdataquality AT huangyue impactofalteringvariousimageparametersonhumanepidermalgrowthfactorreceptor2imageanalysisdataquality AT guohuazhang impactofalteringvariousimageparametersonhumanepidermalgrowthfactorreceptor2imageanalysisdataquality AT rohdegustavok impactofalteringvariousimageparametersonhumanepidermalgrowthfactorreceptor2imageanalysisdataquality |