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Identification of microRNAs as potential biomarkers for lung adenocarcinoma using integrating genomics analysis
Lung adenocarcinoma (LUAD) is the most common histological subtype of non-small cell lung cancer, but novel biomarkers for early diagnosis are lacking. Extensive effort has been exerted to identify miRNA biomarkers in LUAD. Unfortunately, high inter-lab variability and small sample sizes have produc...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Impact Journals LLC
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5609990/ https://www.ncbi.nlm.nih.gov/pubmed/28969058 http://dx.doi.org/10.18632/oncotarget.19358 |
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author | Peng, Zhuo Pan, Longfei Niu, Zequn Li, Wei Dang, Xiaoyan Wan, Lin Zhang, Rui Yang, Shuanying |
author_facet | Peng, Zhuo Pan, Longfei Niu, Zequn Li, Wei Dang, Xiaoyan Wan, Lin Zhang, Rui Yang, Shuanying |
author_sort | Peng, Zhuo |
collection | PubMed |
description | Lung adenocarcinoma (LUAD) is the most common histological subtype of non-small cell lung cancer, but novel biomarkers for early diagnosis are lacking. Extensive effort has been exerted to identify miRNA biomarkers in LUAD. Unfortunately, high inter-lab variability and small sample sizes have produced inconsistent conclusions in this field. To resolve the above-mentioned limitations, we performed a comprehensive analysis based on LUAD miRNome profiling studies using the robust rank aggregation (RRA) method. Moreover, miRNA-gene interaction network, pathway enrichment analysis and Kaplan-Meier survival curves were used to investigate the clinical values and biological functions of the identified miRNAs. A total of six common differentially expressed miRNAs (DEMs) were identified in LUAD. An independent cohort further confirmed that four miRNAs (miR-21-5p, miR-210-3p, miR-182-5p and miR-183-5p) were up-regulated and two miRNAs (miR-126-3p and miR-218-5p) were down-regulated in LUAD tissues. Pathway enrichment analysis also suggested that the above-listed six DEMs may affect LUAD progression via the estrogen signaling pathway. Survival analysis based on the TCGA dataset revealed the potential prognostic values of six DEMs in patients with LUAD (P-value<0.01). In conclusion, we identified a panel of six miRNAs from LUAD using miRNome profiling studies. Our results provide evidence for the use of these six DEMs as novel diagnostic and prognostic biomarkers for LUAD patients. |
format | Online Article Text |
id | pubmed-5609990 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Impact Journals LLC |
record_format | MEDLINE/PubMed |
spelling | pubmed-56099902017-09-29 Identification of microRNAs as potential biomarkers for lung adenocarcinoma using integrating genomics analysis Peng, Zhuo Pan, Longfei Niu, Zequn Li, Wei Dang, Xiaoyan Wan, Lin Zhang, Rui Yang, Shuanying Oncotarget Research Paper Lung adenocarcinoma (LUAD) is the most common histological subtype of non-small cell lung cancer, but novel biomarkers for early diagnosis are lacking. Extensive effort has been exerted to identify miRNA biomarkers in LUAD. Unfortunately, high inter-lab variability and small sample sizes have produced inconsistent conclusions in this field. To resolve the above-mentioned limitations, we performed a comprehensive analysis based on LUAD miRNome profiling studies using the robust rank aggregation (RRA) method. Moreover, miRNA-gene interaction network, pathway enrichment analysis and Kaplan-Meier survival curves were used to investigate the clinical values and biological functions of the identified miRNAs. A total of six common differentially expressed miRNAs (DEMs) were identified in LUAD. An independent cohort further confirmed that four miRNAs (miR-21-5p, miR-210-3p, miR-182-5p and miR-183-5p) were up-regulated and two miRNAs (miR-126-3p and miR-218-5p) were down-regulated in LUAD tissues. Pathway enrichment analysis also suggested that the above-listed six DEMs may affect LUAD progression via the estrogen signaling pathway. Survival analysis based on the TCGA dataset revealed the potential prognostic values of six DEMs in patients with LUAD (P-value<0.01). In conclusion, we identified a panel of six miRNAs from LUAD using miRNome profiling studies. Our results provide evidence for the use of these six DEMs as novel diagnostic and prognostic biomarkers for LUAD patients. Impact Journals LLC 2017-07-18 /pmc/articles/PMC5609990/ /pubmed/28969058 http://dx.doi.org/10.18632/oncotarget.19358 Text en Copyright: © 2017 Peng et al. http://creativecommons.org/licenses/by/3.0/ This article is distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/) (CC-BY), which permits unrestricted use and redistribution provided that the original author and source are credited. |
spellingShingle | Research Paper Peng, Zhuo Pan, Longfei Niu, Zequn Li, Wei Dang, Xiaoyan Wan, Lin Zhang, Rui Yang, Shuanying Identification of microRNAs as potential biomarkers for lung adenocarcinoma using integrating genomics analysis |
title | Identification of microRNAs as potential biomarkers for lung adenocarcinoma using integrating genomics analysis |
title_full | Identification of microRNAs as potential biomarkers for lung adenocarcinoma using integrating genomics analysis |
title_fullStr | Identification of microRNAs as potential biomarkers for lung adenocarcinoma using integrating genomics analysis |
title_full_unstemmed | Identification of microRNAs as potential biomarkers for lung adenocarcinoma using integrating genomics analysis |
title_short | Identification of microRNAs as potential biomarkers for lung adenocarcinoma using integrating genomics analysis |
title_sort | identification of micrornas as potential biomarkers for lung adenocarcinoma using integrating genomics analysis |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5609990/ https://www.ncbi.nlm.nih.gov/pubmed/28969058 http://dx.doi.org/10.18632/oncotarget.19358 |
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