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Analysis of differentially expressed genes in white blood cells isolated from patients with major burn injuries

The aim of the present study was to identify differentially expressed genes (DEGs) and their related functions and pathways of major burn injuries, and to prevent the occurrence of complications. The expression profiling of E-GEOD-37069 was downloaded from ArrayExpress Archive. The DEGs of major bur...

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Autores principales: Tang, Gongjie, Zhang, Tao, Wang, Xinbo, Song, Zengmei, Liu, Fucun, Zhang, Qian, Huo, Ran
Formato: Online Artículo Texto
Lenguaje:English
Publicado: D.A. Spandidos 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5613207/
https://www.ncbi.nlm.nih.gov/pubmed/28966676
http://dx.doi.org/10.3892/etm.2017.4899
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author Tang, Gongjie
Zhang, Tao
Wang, Xinbo
Song, Zengmei
Liu, Fucun
Zhang, Qian
Huo, Ran
author_facet Tang, Gongjie
Zhang, Tao
Wang, Xinbo
Song, Zengmei
Liu, Fucun
Zhang, Qian
Huo, Ran
author_sort Tang, Gongjie
collection PubMed
description The aim of the present study was to identify differentially expressed genes (DEGs) and their related functions and pathways of major burn injuries, and to prevent the occurrence of complications. The expression profiling of E-GEOD-37069 was downloaded from ArrayExpress Archive. The DEGs of major burn injuries were identified. Gene Ontology (GO) and Kyoto Encyclopedia of Gene and Genomes (KEGG) functional enrichment analysis were then performed for the DEGs. Based on the KEGG database, a pathway relationship network was constructed, and DEGs in significant GO terms and pathways were investigated. Gene signal network and gene co-expression network of these inserted DEGs were constructed. A total of 3,328 DEGs of major burn injuries were identified, including 1,337 up- and 1,991 downregulated DEGs. These DEGs were mainly enriched into various GO terms, including transcription, DNA-dependent, signal transduction and blood coagulation. Moreover, they were also enriched into different pathways, such as hematopoietic cell lineage, metabolic pathway and chemokine signaling pathway. The pathway relationship network was constructed with 72 nodes. The MAPK signaling pathway was the hub node. Based on the same gene symbol, 702 DEGs were obtained, identified in both GO terms and pathways. Finally, the gene signaling network and gene co-expression network were constructed with 391 and 128 nodes, respectively. These identified DEGs, including GNB2, LILRA2, ARRB2 and ARHGEF2, may be potential key genes involved in the treatment of major burn injuries and prevention of complications.
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spelling pubmed-56132072017-09-29 Analysis of differentially expressed genes in white blood cells isolated from patients with major burn injuries Tang, Gongjie Zhang, Tao Wang, Xinbo Song, Zengmei Liu, Fucun Zhang, Qian Huo, Ran Exp Ther Med Articles The aim of the present study was to identify differentially expressed genes (DEGs) and their related functions and pathways of major burn injuries, and to prevent the occurrence of complications. The expression profiling of E-GEOD-37069 was downloaded from ArrayExpress Archive. The DEGs of major burn injuries were identified. Gene Ontology (GO) and Kyoto Encyclopedia of Gene and Genomes (KEGG) functional enrichment analysis were then performed for the DEGs. Based on the KEGG database, a pathway relationship network was constructed, and DEGs in significant GO terms and pathways were investigated. Gene signal network and gene co-expression network of these inserted DEGs were constructed. A total of 3,328 DEGs of major burn injuries were identified, including 1,337 up- and 1,991 downregulated DEGs. These DEGs were mainly enriched into various GO terms, including transcription, DNA-dependent, signal transduction and blood coagulation. Moreover, they were also enriched into different pathways, such as hematopoietic cell lineage, metabolic pathway and chemokine signaling pathway. The pathway relationship network was constructed with 72 nodes. The MAPK signaling pathway was the hub node. Based on the same gene symbol, 702 DEGs were obtained, identified in both GO terms and pathways. Finally, the gene signaling network and gene co-expression network were constructed with 391 and 128 nodes, respectively. These identified DEGs, including GNB2, LILRA2, ARRB2 and ARHGEF2, may be potential key genes involved in the treatment of major burn injuries and prevention of complications. D.A. Spandidos 2017-10 2017-08-07 /pmc/articles/PMC5613207/ /pubmed/28966676 http://dx.doi.org/10.3892/etm.2017.4899 Text en Copyright: © Tang et al. This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made.
spellingShingle Articles
Tang, Gongjie
Zhang, Tao
Wang, Xinbo
Song, Zengmei
Liu, Fucun
Zhang, Qian
Huo, Ran
Analysis of differentially expressed genes in white blood cells isolated from patients with major burn injuries
title Analysis of differentially expressed genes in white blood cells isolated from patients with major burn injuries
title_full Analysis of differentially expressed genes in white blood cells isolated from patients with major burn injuries
title_fullStr Analysis of differentially expressed genes in white blood cells isolated from patients with major burn injuries
title_full_unstemmed Analysis of differentially expressed genes in white blood cells isolated from patients with major burn injuries
title_short Analysis of differentially expressed genes in white blood cells isolated from patients with major burn injuries
title_sort analysis of differentially expressed genes in white blood cells isolated from patients with major burn injuries
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5613207/
https://www.ncbi.nlm.nih.gov/pubmed/28966676
http://dx.doi.org/10.3892/etm.2017.4899
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