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Characterization of conformational deformation-coupled interaction between immunoglobulin G1 Fc glycoprotein and a low-affinity Fcγ receptor by deuteration-assisted small-angle neutron scattering()

A recently developed integrative approach combining varied types of experimental data has been successfully applied to three-dimensional modelling of larger biomacromolecular complexes. Deuteration-assisted small-angle neutron scattering (SANS) plays a unique role in this approach by making it possi...

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Autores principales: Yogo, Rina, Yanaka, Saeko, Yagi, Hirokazu, Martel, Anne, Porcar, Linoel, Ueki, Yutaro, Inoue, Rintaro, Sato, Nobuhiro, Sugiyama, Masaaki, Kato, Koichi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5613214/
https://www.ncbi.nlm.nih.gov/pubmed/28955785
http://dx.doi.org/10.1016/j.bbrep.2017.08.004
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author Yogo, Rina
Yanaka, Saeko
Yagi, Hirokazu
Martel, Anne
Porcar, Linoel
Ueki, Yutaro
Inoue, Rintaro
Sato, Nobuhiro
Sugiyama, Masaaki
Kato, Koichi
author_facet Yogo, Rina
Yanaka, Saeko
Yagi, Hirokazu
Martel, Anne
Porcar, Linoel
Ueki, Yutaro
Inoue, Rintaro
Sato, Nobuhiro
Sugiyama, Masaaki
Kato, Koichi
author_sort Yogo, Rina
collection PubMed
description A recently developed integrative approach combining varied types of experimental data has been successfully applied to three-dimensional modelling of larger biomacromolecular complexes. Deuteration-assisted small-angle neutron scattering (SANS) plays a unique role in this approach by making it possible to observe selected components in the complex. It enables integrative modelling of biomolecular complexes based on building-block structures typically provided by X-ray crystallography. In this integrative approach, it is important to be aware of the flexible properties of the individual building blocks. Here we examine the ability of SANS to detect a subtle conformational change of a multidomain protein using the Fc portion of human immunoglobulin G (IgG) interacting with a soluble form of the low-affinity Fcγ receptor IIIb (sFcγRIIIb) as a model system. The IgG-Fc glycoprotein was subjected to SANS in the absence and presence of 75%-deuterated sFcγRIIIb, which was matched out in D(2)O solution. This inverse contrast-matching technique enabled selective observation of SANS from IgG-Fc, thereby detecting its subtle structural deformation induced by the receptor binding. The SANS data were successfully interpreted by considering previously reported crystallographic data and an equilibrium between free and sFcγRIIIb-bound forms. Our SANS data thus demonstrate the applicability of SANS in the integrative approach dealing with biomacromolecular complexes composed of weakly associated building blocks with conformational plasticity.
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spelling pubmed-56132142017-09-27 Characterization of conformational deformation-coupled interaction between immunoglobulin G1 Fc glycoprotein and a low-affinity Fcγ receptor by deuteration-assisted small-angle neutron scattering() Yogo, Rina Yanaka, Saeko Yagi, Hirokazu Martel, Anne Porcar, Linoel Ueki, Yutaro Inoue, Rintaro Sato, Nobuhiro Sugiyama, Masaaki Kato, Koichi Biochem Biophys Rep Research Article A recently developed integrative approach combining varied types of experimental data has been successfully applied to three-dimensional modelling of larger biomacromolecular complexes. Deuteration-assisted small-angle neutron scattering (SANS) plays a unique role in this approach by making it possible to observe selected components in the complex. It enables integrative modelling of biomolecular complexes based on building-block structures typically provided by X-ray crystallography. In this integrative approach, it is important to be aware of the flexible properties of the individual building blocks. Here we examine the ability of SANS to detect a subtle conformational change of a multidomain protein using the Fc portion of human immunoglobulin G (IgG) interacting with a soluble form of the low-affinity Fcγ receptor IIIb (sFcγRIIIb) as a model system. The IgG-Fc glycoprotein was subjected to SANS in the absence and presence of 75%-deuterated sFcγRIIIb, which was matched out in D(2)O solution. This inverse contrast-matching technique enabled selective observation of SANS from IgG-Fc, thereby detecting its subtle structural deformation induced by the receptor binding. The SANS data were successfully interpreted by considering previously reported crystallographic data and an equilibrium between free and sFcγRIIIb-bound forms. Our SANS data thus demonstrate the applicability of SANS in the integrative approach dealing with biomacromolecular complexes composed of weakly associated building blocks with conformational plasticity. Elsevier 2017-08-16 /pmc/articles/PMC5613214/ /pubmed/28955785 http://dx.doi.org/10.1016/j.bbrep.2017.08.004 Text en © 2017 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Research Article
Yogo, Rina
Yanaka, Saeko
Yagi, Hirokazu
Martel, Anne
Porcar, Linoel
Ueki, Yutaro
Inoue, Rintaro
Sato, Nobuhiro
Sugiyama, Masaaki
Kato, Koichi
Characterization of conformational deformation-coupled interaction between immunoglobulin G1 Fc glycoprotein and a low-affinity Fcγ receptor by deuteration-assisted small-angle neutron scattering()
title Characterization of conformational deformation-coupled interaction between immunoglobulin G1 Fc glycoprotein and a low-affinity Fcγ receptor by deuteration-assisted small-angle neutron scattering()
title_full Characterization of conformational deformation-coupled interaction between immunoglobulin G1 Fc glycoprotein and a low-affinity Fcγ receptor by deuteration-assisted small-angle neutron scattering()
title_fullStr Characterization of conformational deformation-coupled interaction between immunoglobulin G1 Fc glycoprotein and a low-affinity Fcγ receptor by deuteration-assisted small-angle neutron scattering()
title_full_unstemmed Characterization of conformational deformation-coupled interaction between immunoglobulin G1 Fc glycoprotein and a low-affinity Fcγ receptor by deuteration-assisted small-angle neutron scattering()
title_short Characterization of conformational deformation-coupled interaction between immunoglobulin G1 Fc glycoprotein and a low-affinity Fcγ receptor by deuteration-assisted small-angle neutron scattering()
title_sort characterization of conformational deformation-coupled interaction between immunoglobulin g1 fc glycoprotein and a low-affinity fcγ receptor by deuteration-assisted small-angle neutron scattering()
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5613214/
https://www.ncbi.nlm.nih.gov/pubmed/28955785
http://dx.doi.org/10.1016/j.bbrep.2017.08.004
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