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Skin mucus proteins of lumpsucker (Cyclopterus lumpus)
Fish skin mucus serves as a first line of defense against pathogens and external stressors. In this study the proteomic profile of lumpsucker skin mucus was characterized using 2D gels coupled with tandem mass spectrometry. Mucosal proteins were identified by homology searches across the databases S...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5614610/ https://www.ncbi.nlm.nih.gov/pubmed/28956008 http://dx.doi.org/10.1016/j.bbrep.2016.12.016 |
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author | Patel, Deepti Manjari Brinchmann, Monica.F. |
author_facet | Patel, Deepti Manjari Brinchmann, Monica.F. |
author_sort | Patel, Deepti Manjari |
collection | PubMed |
description | Fish skin mucus serves as a first line of defense against pathogens and external stressors. In this study the proteomic profile of lumpsucker skin mucus was characterized using 2D gels coupled with tandem mass spectrometry. Mucosal proteins were identified by homology searches across the databases SwissProt, NCBInr and vertebrate EST. The identified proteins were clustered into ten groups based on their gene ontology biological process in PANTHER (www.patherdb.org). Calmodulin, cystatin-B, histone H2B, peroxiredoxin1, apolipoprotein A1, natterin-2, 14-3-3 protein, alfa enolase, pentraxin, warm temperature acclimation 65 kDa (WAP65kDa) and heat shock proteins were identified. Several of the proteins are known to be involved in immune and/or stress responses. Proteomic profile established in this study could be a benchmark for differential proteomics studies. |
format | Online Article Text |
id | pubmed-5614610 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-56146102017-09-27 Skin mucus proteins of lumpsucker (Cyclopterus lumpus) Patel, Deepti Manjari Brinchmann, Monica.F. Biochem Biophys Rep Research Article Fish skin mucus serves as a first line of defense against pathogens and external stressors. In this study the proteomic profile of lumpsucker skin mucus was characterized using 2D gels coupled with tandem mass spectrometry. Mucosal proteins were identified by homology searches across the databases SwissProt, NCBInr and vertebrate EST. The identified proteins were clustered into ten groups based on their gene ontology biological process in PANTHER (www.patherdb.org). Calmodulin, cystatin-B, histone H2B, peroxiredoxin1, apolipoprotein A1, natterin-2, 14-3-3 protein, alfa enolase, pentraxin, warm temperature acclimation 65 kDa (WAP65kDa) and heat shock proteins were identified. Several of the proteins are known to be involved in immune and/or stress responses. Proteomic profile established in this study could be a benchmark for differential proteomics studies. Elsevier 2017-01-05 /pmc/articles/PMC5614610/ /pubmed/28956008 http://dx.doi.org/10.1016/j.bbrep.2016.12.016 Text en © 2017 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Research Article Patel, Deepti Manjari Brinchmann, Monica.F. Skin mucus proteins of lumpsucker (Cyclopterus lumpus) |
title | Skin mucus proteins of lumpsucker (Cyclopterus lumpus) |
title_full | Skin mucus proteins of lumpsucker (Cyclopterus lumpus) |
title_fullStr | Skin mucus proteins of lumpsucker (Cyclopterus lumpus) |
title_full_unstemmed | Skin mucus proteins of lumpsucker (Cyclopterus lumpus) |
title_short | Skin mucus proteins of lumpsucker (Cyclopterus lumpus) |
title_sort | skin mucus proteins of lumpsucker (cyclopterus lumpus) |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5614610/ https://www.ncbi.nlm.nih.gov/pubmed/28956008 http://dx.doi.org/10.1016/j.bbrep.2016.12.016 |
work_keys_str_mv | AT pateldeeptimanjari skinmucusproteinsoflumpsuckercyclopteruslumpus AT brinchmannmonicaf skinmucusproteinsoflumpsuckercyclopteruslumpus |