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Skin mucus proteins of lumpsucker (Cyclopterus lumpus)

Fish skin mucus serves as a first line of defense against pathogens and external stressors. In this study the proteomic profile of lumpsucker skin mucus was characterized using 2D gels coupled with tandem mass spectrometry. Mucosal proteins were identified by homology searches across the databases S...

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Detalles Bibliográficos
Autores principales: Patel, Deepti Manjari, Brinchmann, Monica.F.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5614610/
https://www.ncbi.nlm.nih.gov/pubmed/28956008
http://dx.doi.org/10.1016/j.bbrep.2016.12.016
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author Patel, Deepti Manjari
Brinchmann, Monica.F.
author_facet Patel, Deepti Manjari
Brinchmann, Monica.F.
author_sort Patel, Deepti Manjari
collection PubMed
description Fish skin mucus serves as a first line of defense against pathogens and external stressors. In this study the proteomic profile of lumpsucker skin mucus was characterized using 2D gels coupled with tandem mass spectrometry. Mucosal proteins were identified by homology searches across the databases SwissProt, NCBInr and vertebrate EST. The identified proteins were clustered into ten groups based on their gene ontology biological process in PANTHER (www.patherdb.org). Calmodulin, cystatin-B, histone H2B, peroxiredoxin1, apolipoprotein A1, natterin-2, 14-3-3 protein, alfa enolase, pentraxin, warm temperature acclimation 65 kDa (WAP65kDa) and heat shock proteins were identified. Several of the proteins are known to be involved in immune and/or stress responses. Proteomic profile established in this study could be a benchmark for differential proteomics studies.
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spelling pubmed-56146102017-09-27 Skin mucus proteins of lumpsucker (Cyclopterus lumpus) Patel, Deepti Manjari Brinchmann, Monica.F. Biochem Biophys Rep Research Article Fish skin mucus serves as a first line of defense against pathogens and external stressors. In this study the proteomic profile of lumpsucker skin mucus was characterized using 2D gels coupled with tandem mass spectrometry. Mucosal proteins were identified by homology searches across the databases SwissProt, NCBInr and vertebrate EST. The identified proteins were clustered into ten groups based on their gene ontology biological process in PANTHER (www.patherdb.org). Calmodulin, cystatin-B, histone H2B, peroxiredoxin1, apolipoprotein A1, natterin-2, 14-3-3 protein, alfa enolase, pentraxin, warm temperature acclimation 65 kDa (WAP65kDa) and heat shock proteins were identified. Several of the proteins are known to be involved in immune and/or stress responses. Proteomic profile established in this study could be a benchmark for differential proteomics studies. Elsevier 2017-01-05 /pmc/articles/PMC5614610/ /pubmed/28956008 http://dx.doi.org/10.1016/j.bbrep.2016.12.016 Text en © 2017 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Research Article
Patel, Deepti Manjari
Brinchmann, Monica.F.
Skin mucus proteins of lumpsucker (Cyclopterus lumpus)
title Skin mucus proteins of lumpsucker (Cyclopterus lumpus)
title_full Skin mucus proteins of lumpsucker (Cyclopterus lumpus)
title_fullStr Skin mucus proteins of lumpsucker (Cyclopterus lumpus)
title_full_unstemmed Skin mucus proteins of lumpsucker (Cyclopterus lumpus)
title_short Skin mucus proteins of lumpsucker (Cyclopterus lumpus)
title_sort skin mucus proteins of lumpsucker (cyclopterus lumpus)
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5614610/
https://www.ncbi.nlm.nih.gov/pubmed/28956008
http://dx.doi.org/10.1016/j.bbrep.2016.12.016
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