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Genome-Wide Identification and Characterization of the GmSnRK2 Family in Soybean

Sucrose non-fermenting-1 (SNF1)-related protein kinase 2s (SnRK2s) that were reported to be involved in the transduction of abscisic acid (ABA) signaling, play important roles in response to biotic and abiotic stresses in plants. Compared to the systemic investigation of SnRK2s in Arabidopsis thalia...

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Autores principales: Zhao, Wei, Cheng, Yi-Hui, Zhang, Chi, Shen, Xin-Jie, You, Qing-Bo, Guo, Wei, Li, Xiang, Song, Xue-Jiao, Zhou, Xin-An, Jiao, Yong-Qing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5618483/
https://www.ncbi.nlm.nih.gov/pubmed/28832544
http://dx.doi.org/10.3390/ijms18091834
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author Zhao, Wei
Cheng, Yi-Hui
Zhang, Chi
Shen, Xin-Jie
You, Qing-Bo
Guo, Wei
Li, Xiang
Song, Xue-Jiao
Zhou, Xin-An
Jiao, Yong-Qing
author_facet Zhao, Wei
Cheng, Yi-Hui
Zhang, Chi
Shen, Xin-Jie
You, Qing-Bo
Guo, Wei
Li, Xiang
Song, Xue-Jiao
Zhou, Xin-An
Jiao, Yong-Qing
author_sort Zhao, Wei
collection PubMed
description Sucrose non-fermenting-1 (SNF1)-related protein kinase 2s (SnRK2s) that were reported to be involved in the transduction of abscisic acid (ABA) signaling, play important roles in response to biotic and abiotic stresses in plants. Compared to the systemic investigation of SnRK2s in Arabidopsis thaliana and Oryza sativa, little is known regarding SnRK2s in soybean, which is one of the most important oil and protein crops. In the present study, we performed genome-wide identification and characterization of GmSnRK2s in soybean. In summary, 22 GmSnRK2s were identified and clustered into four groups. Phylogenetic analysis indicated the expansion of SnRK2 gene family during the evolution of soybean. Various cis-acting elements such as ABA Response Elements (ABREs) were identified and analyzed in the promoter regions of GmSnRK2s. The results of RNA sequencing (RNA-Seq) data for different soybean tissues showed that GmSnRK2s exhibited spatio-temporally specific expression patterns during soybean growth and development. Certain GmSnRK2s could respond to the treatments including salinity, ABA and strigolactones. Our results provide a foundation for the further elucidation of the function of GmSnRK2 genes in soybean.
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spelling pubmed-56184832017-09-30 Genome-Wide Identification and Characterization of the GmSnRK2 Family in Soybean Zhao, Wei Cheng, Yi-Hui Zhang, Chi Shen, Xin-Jie You, Qing-Bo Guo, Wei Li, Xiang Song, Xue-Jiao Zhou, Xin-An Jiao, Yong-Qing Int J Mol Sci Article Sucrose non-fermenting-1 (SNF1)-related protein kinase 2s (SnRK2s) that were reported to be involved in the transduction of abscisic acid (ABA) signaling, play important roles in response to biotic and abiotic stresses in plants. Compared to the systemic investigation of SnRK2s in Arabidopsis thaliana and Oryza sativa, little is known regarding SnRK2s in soybean, which is one of the most important oil and protein crops. In the present study, we performed genome-wide identification and characterization of GmSnRK2s in soybean. In summary, 22 GmSnRK2s were identified and clustered into four groups. Phylogenetic analysis indicated the expansion of SnRK2 gene family during the evolution of soybean. Various cis-acting elements such as ABA Response Elements (ABREs) were identified and analyzed in the promoter regions of GmSnRK2s. The results of RNA sequencing (RNA-Seq) data for different soybean tissues showed that GmSnRK2s exhibited spatio-temporally specific expression patterns during soybean growth and development. Certain GmSnRK2s could respond to the treatments including salinity, ABA and strigolactones. Our results provide a foundation for the further elucidation of the function of GmSnRK2 genes in soybean. MDPI 2017-08-23 /pmc/articles/PMC5618483/ /pubmed/28832544 http://dx.doi.org/10.3390/ijms18091834 Text en © 2017 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Zhao, Wei
Cheng, Yi-Hui
Zhang, Chi
Shen, Xin-Jie
You, Qing-Bo
Guo, Wei
Li, Xiang
Song, Xue-Jiao
Zhou, Xin-An
Jiao, Yong-Qing
Genome-Wide Identification and Characterization of the GmSnRK2 Family in Soybean
title Genome-Wide Identification and Characterization of the GmSnRK2 Family in Soybean
title_full Genome-Wide Identification and Characterization of the GmSnRK2 Family in Soybean
title_fullStr Genome-Wide Identification and Characterization of the GmSnRK2 Family in Soybean
title_full_unstemmed Genome-Wide Identification and Characterization of the GmSnRK2 Family in Soybean
title_short Genome-Wide Identification and Characterization of the GmSnRK2 Family in Soybean
title_sort genome-wide identification and characterization of the gmsnrk2 family in soybean
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5618483/
https://www.ncbi.nlm.nih.gov/pubmed/28832544
http://dx.doi.org/10.3390/ijms18091834
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