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Genome-Wide Identification and Characterization of the GmSnRK2 Family in Soybean
Sucrose non-fermenting-1 (SNF1)-related protein kinase 2s (SnRK2s) that were reported to be involved in the transduction of abscisic acid (ABA) signaling, play important roles in response to biotic and abiotic stresses in plants. Compared to the systemic investigation of SnRK2s in Arabidopsis thalia...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5618483/ https://www.ncbi.nlm.nih.gov/pubmed/28832544 http://dx.doi.org/10.3390/ijms18091834 |
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author | Zhao, Wei Cheng, Yi-Hui Zhang, Chi Shen, Xin-Jie You, Qing-Bo Guo, Wei Li, Xiang Song, Xue-Jiao Zhou, Xin-An Jiao, Yong-Qing |
author_facet | Zhao, Wei Cheng, Yi-Hui Zhang, Chi Shen, Xin-Jie You, Qing-Bo Guo, Wei Li, Xiang Song, Xue-Jiao Zhou, Xin-An Jiao, Yong-Qing |
author_sort | Zhao, Wei |
collection | PubMed |
description | Sucrose non-fermenting-1 (SNF1)-related protein kinase 2s (SnRK2s) that were reported to be involved in the transduction of abscisic acid (ABA) signaling, play important roles in response to biotic and abiotic stresses in plants. Compared to the systemic investigation of SnRK2s in Arabidopsis thaliana and Oryza sativa, little is known regarding SnRK2s in soybean, which is one of the most important oil and protein crops. In the present study, we performed genome-wide identification and characterization of GmSnRK2s in soybean. In summary, 22 GmSnRK2s were identified and clustered into four groups. Phylogenetic analysis indicated the expansion of SnRK2 gene family during the evolution of soybean. Various cis-acting elements such as ABA Response Elements (ABREs) were identified and analyzed in the promoter regions of GmSnRK2s. The results of RNA sequencing (RNA-Seq) data for different soybean tissues showed that GmSnRK2s exhibited spatio-temporally specific expression patterns during soybean growth and development. Certain GmSnRK2s could respond to the treatments including salinity, ABA and strigolactones. Our results provide a foundation for the further elucidation of the function of GmSnRK2 genes in soybean. |
format | Online Article Text |
id | pubmed-5618483 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-56184832017-09-30 Genome-Wide Identification and Characterization of the GmSnRK2 Family in Soybean Zhao, Wei Cheng, Yi-Hui Zhang, Chi Shen, Xin-Jie You, Qing-Bo Guo, Wei Li, Xiang Song, Xue-Jiao Zhou, Xin-An Jiao, Yong-Qing Int J Mol Sci Article Sucrose non-fermenting-1 (SNF1)-related protein kinase 2s (SnRK2s) that were reported to be involved in the transduction of abscisic acid (ABA) signaling, play important roles in response to biotic and abiotic stresses in plants. Compared to the systemic investigation of SnRK2s in Arabidopsis thaliana and Oryza sativa, little is known regarding SnRK2s in soybean, which is one of the most important oil and protein crops. In the present study, we performed genome-wide identification and characterization of GmSnRK2s in soybean. In summary, 22 GmSnRK2s were identified and clustered into four groups. Phylogenetic analysis indicated the expansion of SnRK2 gene family during the evolution of soybean. Various cis-acting elements such as ABA Response Elements (ABREs) were identified and analyzed in the promoter regions of GmSnRK2s. The results of RNA sequencing (RNA-Seq) data for different soybean tissues showed that GmSnRK2s exhibited spatio-temporally specific expression patterns during soybean growth and development. Certain GmSnRK2s could respond to the treatments including salinity, ABA and strigolactones. Our results provide a foundation for the further elucidation of the function of GmSnRK2 genes in soybean. MDPI 2017-08-23 /pmc/articles/PMC5618483/ /pubmed/28832544 http://dx.doi.org/10.3390/ijms18091834 Text en © 2017 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Zhao, Wei Cheng, Yi-Hui Zhang, Chi Shen, Xin-Jie You, Qing-Bo Guo, Wei Li, Xiang Song, Xue-Jiao Zhou, Xin-An Jiao, Yong-Qing Genome-Wide Identification and Characterization of the GmSnRK2 Family in Soybean |
title | Genome-Wide Identification and Characterization of the GmSnRK2 Family in Soybean |
title_full | Genome-Wide Identification and Characterization of the GmSnRK2 Family in Soybean |
title_fullStr | Genome-Wide Identification and Characterization of the GmSnRK2 Family in Soybean |
title_full_unstemmed | Genome-Wide Identification and Characterization of the GmSnRK2 Family in Soybean |
title_short | Genome-Wide Identification and Characterization of the GmSnRK2 Family in Soybean |
title_sort | genome-wide identification and characterization of the gmsnrk2 family in soybean |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5618483/ https://www.ncbi.nlm.nih.gov/pubmed/28832544 http://dx.doi.org/10.3390/ijms18091834 |
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