Cargando…

Probabilistic models for neural populations that naturally capture global coupling and criticality

Advances in multi-unit recordings pave the way for statistical modeling of activity patterns in large neural populations. Recent studies have shown that the summed activity of all neurons strongly shapes the population response. A separate recent finding has been that neural populations also exhibit...

Descripción completa

Detalles Bibliográficos
Autores principales: Humplik, Jan, Tkačik, Gašper
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5621705/
https://www.ncbi.nlm.nih.gov/pubmed/28926564
http://dx.doi.org/10.1371/journal.pcbi.1005763
_version_ 1783267796828815360
author Humplik, Jan
Tkačik, Gašper
author_facet Humplik, Jan
Tkačik, Gašper
author_sort Humplik, Jan
collection PubMed
description Advances in multi-unit recordings pave the way for statistical modeling of activity patterns in large neural populations. Recent studies have shown that the summed activity of all neurons strongly shapes the population response. A separate recent finding has been that neural populations also exhibit criticality, an anomalously large dynamic range for the probabilities of different population activity patterns. Motivated by these two observations, we introduce a class of probabilistic models which takes into account the prior knowledge that the neural population could be globally coupled and close to critical. These models consist of an energy function which parametrizes interactions between small groups of neurons, and an arbitrary positive, strictly increasing, and twice differentiable function which maps the energy of a population pattern to its probability. We show that: 1) augmenting a pairwise Ising model with a nonlinearity yields an accurate description of the activity of retinal ganglion cells which outperforms previous models based on the summed activity of neurons; 2) prior knowledge that the population is critical translates to prior expectations about the shape of the nonlinearity; 3) the nonlinearity admits an interpretation in terms of a continuous latent variable globally coupling the system whose distribution we can infer from data. Our method is independent of the underlying system’s state space; hence, it can be applied to other systems such as natural scenes or amino acid sequences of proteins which are also known to exhibit criticality.
format Online
Article
Text
id pubmed-5621705
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-56217052017-10-17 Probabilistic models for neural populations that naturally capture global coupling and criticality Humplik, Jan Tkačik, Gašper PLoS Comput Biol Research Article Advances in multi-unit recordings pave the way for statistical modeling of activity patterns in large neural populations. Recent studies have shown that the summed activity of all neurons strongly shapes the population response. A separate recent finding has been that neural populations also exhibit criticality, an anomalously large dynamic range for the probabilities of different population activity patterns. Motivated by these two observations, we introduce a class of probabilistic models which takes into account the prior knowledge that the neural population could be globally coupled and close to critical. These models consist of an energy function which parametrizes interactions between small groups of neurons, and an arbitrary positive, strictly increasing, and twice differentiable function which maps the energy of a population pattern to its probability. We show that: 1) augmenting a pairwise Ising model with a nonlinearity yields an accurate description of the activity of retinal ganglion cells which outperforms previous models based on the summed activity of neurons; 2) prior knowledge that the population is critical translates to prior expectations about the shape of the nonlinearity; 3) the nonlinearity admits an interpretation in terms of a continuous latent variable globally coupling the system whose distribution we can infer from data. Our method is independent of the underlying system’s state space; hence, it can be applied to other systems such as natural scenes or amino acid sequences of proteins which are also known to exhibit criticality. Public Library of Science 2017-09-19 /pmc/articles/PMC5621705/ /pubmed/28926564 http://dx.doi.org/10.1371/journal.pcbi.1005763 Text en © 2017 Humplik, Tkačik http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Humplik, Jan
Tkačik, Gašper
Probabilistic models for neural populations that naturally capture global coupling and criticality
title Probabilistic models for neural populations that naturally capture global coupling and criticality
title_full Probabilistic models for neural populations that naturally capture global coupling and criticality
title_fullStr Probabilistic models for neural populations that naturally capture global coupling and criticality
title_full_unstemmed Probabilistic models for neural populations that naturally capture global coupling and criticality
title_short Probabilistic models for neural populations that naturally capture global coupling and criticality
title_sort probabilistic models for neural populations that naturally capture global coupling and criticality
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5621705/
https://www.ncbi.nlm.nih.gov/pubmed/28926564
http://dx.doi.org/10.1371/journal.pcbi.1005763
work_keys_str_mv AT humplikjan probabilisticmodelsforneuralpopulationsthatnaturallycaptureglobalcouplingandcriticality
AT tkacikgasper probabilisticmodelsforneuralpopulationsthatnaturallycaptureglobalcouplingandcriticality