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Inverse Resolution Limit of Partition Density and Detecting Overlapping Communities by Link-Surprise
Finding overlapping communities of complex networks remains a challenge in network science. To address this challenge, one of the widely used approaches is finding the communities of links by optimizing the objective function, partition density. In this study, we show that partition density suffers...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5622083/ https://www.ncbi.nlm.nih.gov/pubmed/28963540 http://dx.doi.org/10.1038/s41598-017-12432-1 |
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author | Lee, Juyong Zhang, Zhong-Yuan Lee, Jooyoung Brooks, Bernard R. Ahn, Yong-Yeol |
author_facet | Lee, Juyong Zhang, Zhong-Yuan Lee, Jooyoung Brooks, Bernard R. Ahn, Yong-Yeol |
author_sort | Lee, Juyong |
collection | PubMed |
description | Finding overlapping communities of complex networks remains a challenge in network science. To address this challenge, one of the widely used approaches is finding the communities of links by optimizing the objective function, partition density. In this study, we show that partition density suffers from inverse resolution limit; it has a strong preference to triangles. This resolution limit makes partition density an improper objective function for global optimization. The conditions where partition density prefers triangles to larger link community structures are analytically derived and confirmed with global optimization calculations using synthetic and real-world networks. To overcome this limitation of partition density, we suggest an alternative measure, Link Surprise, to find link communities, which is suitable for global optimization. Benchmark studies demonstrate that global optimization of Link Surprise yields meaningful and more accurate link community structures than partition density optimization. |
format | Online Article Text |
id | pubmed-5622083 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-56220832017-10-12 Inverse Resolution Limit of Partition Density and Detecting Overlapping Communities by Link-Surprise Lee, Juyong Zhang, Zhong-Yuan Lee, Jooyoung Brooks, Bernard R. Ahn, Yong-Yeol Sci Rep Article Finding overlapping communities of complex networks remains a challenge in network science. To address this challenge, one of the widely used approaches is finding the communities of links by optimizing the objective function, partition density. In this study, we show that partition density suffers from inverse resolution limit; it has a strong preference to triangles. This resolution limit makes partition density an improper objective function for global optimization. The conditions where partition density prefers triangles to larger link community structures are analytically derived and confirmed with global optimization calculations using synthetic and real-world networks. To overcome this limitation of partition density, we suggest an alternative measure, Link Surprise, to find link communities, which is suitable for global optimization. Benchmark studies demonstrate that global optimization of Link Surprise yields meaningful and more accurate link community structures than partition density optimization. Nature Publishing Group UK 2017-09-29 /pmc/articles/PMC5622083/ /pubmed/28963540 http://dx.doi.org/10.1038/s41598-017-12432-1 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Lee, Juyong Zhang, Zhong-Yuan Lee, Jooyoung Brooks, Bernard R. Ahn, Yong-Yeol Inverse Resolution Limit of Partition Density and Detecting Overlapping Communities by Link-Surprise |
title | Inverse Resolution Limit of Partition Density and Detecting Overlapping Communities by Link-Surprise |
title_full | Inverse Resolution Limit of Partition Density and Detecting Overlapping Communities by Link-Surprise |
title_fullStr | Inverse Resolution Limit of Partition Density and Detecting Overlapping Communities by Link-Surprise |
title_full_unstemmed | Inverse Resolution Limit of Partition Density and Detecting Overlapping Communities by Link-Surprise |
title_short | Inverse Resolution Limit of Partition Density and Detecting Overlapping Communities by Link-Surprise |
title_sort | inverse resolution limit of partition density and detecting overlapping communities by link-surprise |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5622083/ https://www.ncbi.nlm.nih.gov/pubmed/28963540 http://dx.doi.org/10.1038/s41598-017-12432-1 |
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