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Identifying parameter regions for multistationarity

Mathematical modelling has become an established tool for studying the dynamics of biological systems. Current applications range from building models that reproduce quantitative data to identifying systems with predefined qualitative features, such as switching behaviour, bistability or oscillation...

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Detalles Bibliográficos
Autores principales: Conradi, Carsten, Feliu, Elisenda, Mincheva, Maya, Wiuf, Carsten
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5626113/
https://www.ncbi.nlm.nih.gov/pubmed/28972969
http://dx.doi.org/10.1371/journal.pcbi.1005751
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author Conradi, Carsten
Feliu, Elisenda
Mincheva, Maya
Wiuf, Carsten
author_facet Conradi, Carsten
Feliu, Elisenda
Mincheva, Maya
Wiuf, Carsten
author_sort Conradi, Carsten
collection PubMed
description Mathematical modelling has become an established tool for studying the dynamics of biological systems. Current applications range from building models that reproduce quantitative data to identifying systems with predefined qualitative features, such as switching behaviour, bistability or oscillations. Mathematically, the latter question amounts to identifying parameter values associated with a given qualitative feature. We introduce a procedure to partition the parameter space of a parameterized system of ordinary differential equations into regions for which the system has a unique or multiple equilibria. The procedure is based on the computation of the Brouwer degree, and it creates a multivariate polynomial with parameter depending coefficients. The signs of the coefficients determine parameter regions with and without multistationarity. A particular strength of the procedure is the avoidance of numerical analysis and parameter sampling. The procedure consists of a number of steps. Each of these steps might be addressed algorithmically using various computer programs and available software, or manually. We demonstrate our procedure on several models of gene transcription and cell signalling, and show that in many cases we obtain a complete partitioning of the parameter space with respect to multistationarity.
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spelling pubmed-56261132017-10-17 Identifying parameter regions for multistationarity Conradi, Carsten Feliu, Elisenda Mincheva, Maya Wiuf, Carsten PLoS Comput Biol Research Article Mathematical modelling has become an established tool for studying the dynamics of biological systems. Current applications range from building models that reproduce quantitative data to identifying systems with predefined qualitative features, such as switching behaviour, bistability or oscillations. Mathematically, the latter question amounts to identifying parameter values associated with a given qualitative feature. We introduce a procedure to partition the parameter space of a parameterized system of ordinary differential equations into regions for which the system has a unique or multiple equilibria. The procedure is based on the computation of the Brouwer degree, and it creates a multivariate polynomial with parameter depending coefficients. The signs of the coefficients determine parameter regions with and without multistationarity. A particular strength of the procedure is the avoidance of numerical analysis and parameter sampling. The procedure consists of a number of steps. Each of these steps might be addressed algorithmically using various computer programs and available software, or manually. We demonstrate our procedure on several models of gene transcription and cell signalling, and show that in many cases we obtain a complete partitioning of the parameter space with respect to multistationarity. Public Library of Science 2017-10-03 /pmc/articles/PMC5626113/ /pubmed/28972969 http://dx.doi.org/10.1371/journal.pcbi.1005751 Text en © 2017 Conradi et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Conradi, Carsten
Feliu, Elisenda
Mincheva, Maya
Wiuf, Carsten
Identifying parameter regions for multistationarity
title Identifying parameter regions for multistationarity
title_full Identifying parameter regions for multistationarity
title_fullStr Identifying parameter regions for multistationarity
title_full_unstemmed Identifying parameter regions for multistationarity
title_short Identifying parameter regions for multistationarity
title_sort identifying parameter regions for multistationarity
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5626113/
https://www.ncbi.nlm.nih.gov/pubmed/28972969
http://dx.doi.org/10.1371/journal.pcbi.1005751
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