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Microbial functional genes elucidate environmental drivers of biofilm metabolism in glacier-fed streams

Benthic biofilms in glacier-fed streams harbor diverse microorganisms driving biogeochemical cycles and, consequently, influencing ecosystem-level processes. Benthic biofilms are vulnerable to glacial retreat induced by climate change. To investigate microbial functions of benthic biofilms in glacie...

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Autores principales: Ren, Ze, Gao, Hongkai, Elser, James J., Zhao, Qiudong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5627277/
https://www.ncbi.nlm.nih.gov/pubmed/28978929
http://dx.doi.org/10.1038/s41598-017-13086-9
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author Ren, Ze
Gao, Hongkai
Elser, James J.
Zhao, Qiudong
author_facet Ren, Ze
Gao, Hongkai
Elser, James J.
Zhao, Qiudong
author_sort Ren, Ze
collection PubMed
description Benthic biofilms in glacier-fed streams harbor diverse microorganisms driving biogeochemical cycles and, consequently, influencing ecosystem-level processes. Benthic biofilms are vulnerable to glacial retreat induced by climate change. To investigate microbial functions of benthic biofilms in glacier-fed streams, we predicted metagenomes from 16s rRNA gene sequence data using PICRUSt and identified functional genes associated with nitrogen and sulfur metabolisms based on KEGG database and explored the relationships between metabolic pathways and abiotic factors in glacier-fed streams in the Tianshan Mountains in Central Asia. Results showed that the distribution of functional genes was mainly associated with glacier area proportion, glacier source proportion, total nitrogen, dissolved organic carbon, and pH. For nitrogen metabolism, the relative abundance of functional genes associated with dissimilatory pathways was higher than those for assimilatory pathways. The relative abundance of functional genes associated with assimilatory sulfate reduction was higher than those involved with the sulfur oxidation system and dissimilatory sulfate reduction. Hydrological factors had more significant correlations with nitrogen metabolism than physicochemical factors and anammox was the most sensitive nitrogen cycling pathway responding to variation of the abiotic environment in these glacial-fed streams. In contrast, sulfur metabolism pathways were not sensitive to variations of abiotic factors in these systems.
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spelling pubmed-56272772017-10-12 Microbial functional genes elucidate environmental drivers of biofilm metabolism in glacier-fed streams Ren, Ze Gao, Hongkai Elser, James J. Zhao, Qiudong Sci Rep Article Benthic biofilms in glacier-fed streams harbor diverse microorganisms driving biogeochemical cycles and, consequently, influencing ecosystem-level processes. Benthic biofilms are vulnerable to glacial retreat induced by climate change. To investigate microbial functions of benthic biofilms in glacier-fed streams, we predicted metagenomes from 16s rRNA gene sequence data using PICRUSt and identified functional genes associated with nitrogen and sulfur metabolisms based on KEGG database and explored the relationships between metabolic pathways and abiotic factors in glacier-fed streams in the Tianshan Mountains in Central Asia. Results showed that the distribution of functional genes was mainly associated with glacier area proportion, glacier source proportion, total nitrogen, dissolved organic carbon, and pH. For nitrogen metabolism, the relative abundance of functional genes associated with dissimilatory pathways was higher than those for assimilatory pathways. The relative abundance of functional genes associated with assimilatory sulfate reduction was higher than those involved with the sulfur oxidation system and dissimilatory sulfate reduction. Hydrological factors had more significant correlations with nitrogen metabolism than physicochemical factors and anammox was the most sensitive nitrogen cycling pathway responding to variation of the abiotic environment in these glacial-fed streams. In contrast, sulfur metabolism pathways were not sensitive to variations of abiotic factors in these systems. Nature Publishing Group UK 2017-10-04 /pmc/articles/PMC5627277/ /pubmed/28978929 http://dx.doi.org/10.1038/s41598-017-13086-9 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Ren, Ze
Gao, Hongkai
Elser, James J.
Zhao, Qiudong
Microbial functional genes elucidate environmental drivers of biofilm metabolism in glacier-fed streams
title Microbial functional genes elucidate environmental drivers of biofilm metabolism in glacier-fed streams
title_full Microbial functional genes elucidate environmental drivers of biofilm metabolism in glacier-fed streams
title_fullStr Microbial functional genes elucidate environmental drivers of biofilm metabolism in glacier-fed streams
title_full_unstemmed Microbial functional genes elucidate environmental drivers of biofilm metabolism in glacier-fed streams
title_short Microbial functional genes elucidate environmental drivers of biofilm metabolism in glacier-fed streams
title_sort microbial functional genes elucidate environmental drivers of biofilm metabolism in glacier-fed streams
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5627277/
https://www.ncbi.nlm.nih.gov/pubmed/28978929
http://dx.doi.org/10.1038/s41598-017-13086-9
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