Cargando…
BioXTAS RAW: improvements to a free open-source program for small-angle X-ray scattering data reduction and analysis
BioXTAS RAW is a graphical-user-interface-based free open-source Python program for reduction and analysis of small-angle X-ray solution scattering (SAXS) data. The software is designed for biological SAXS data and enables creation and plotting of one-dimensional scattering profiles from two-dimensi...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2017
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5627684/ https://www.ncbi.nlm.nih.gov/pubmed/29021737 http://dx.doi.org/10.1107/S1600576717011438 |
_version_ | 1783268751656878080 |
---|---|
author | Hopkins, Jesse Bennett Gillilan, Richard E. Skou, Soren |
author_facet | Hopkins, Jesse Bennett Gillilan, Richard E. Skou, Soren |
author_sort | Hopkins, Jesse Bennett |
collection | PubMed |
description | BioXTAS RAW is a graphical-user-interface-based free open-source Python program for reduction and analysis of small-angle X-ray solution scattering (SAXS) data. The software is designed for biological SAXS data and enables creation and plotting of one-dimensional scattering profiles from two-dimensional detector images, standard data operations such as averaging and subtraction and analysis of radius of gyration and molecular weight, and advanced analysis such as calculation of inverse Fourier transforms and envelopes. It also allows easy processing of inline size-exclusion chromatography coupled SAXS data and data deconvolution using the evolving factor analysis method. It provides an alternative to closed-source programs such as Primus and ScÅtter for primary data analysis. Because it can calibrate, mask and integrate images it also provides an alternative to synchrotron beamline pipelines that scientists can install on their own computers and use both at home and at the beamline. |
format | Online Article Text |
id | pubmed-5627684 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-56276842017-10-11 BioXTAS RAW: improvements to a free open-source program for small-angle X-ray scattering data reduction and analysis Hopkins, Jesse Bennett Gillilan, Richard E. Skou, Soren J Appl Crystallogr Computer Programs BioXTAS RAW is a graphical-user-interface-based free open-source Python program for reduction and analysis of small-angle X-ray solution scattering (SAXS) data. The software is designed for biological SAXS data and enables creation and plotting of one-dimensional scattering profiles from two-dimensional detector images, standard data operations such as averaging and subtraction and analysis of radius of gyration and molecular weight, and advanced analysis such as calculation of inverse Fourier transforms and envelopes. It also allows easy processing of inline size-exclusion chromatography coupled SAXS data and data deconvolution using the evolving factor analysis method. It provides an alternative to closed-source programs such as Primus and ScÅtter for primary data analysis. Because it can calibrate, mask and integrate images it also provides an alternative to synchrotron beamline pipelines that scientists can install on their own computers and use both at home and at the beamline. International Union of Crystallography 2017-09-05 /pmc/articles/PMC5627684/ /pubmed/29021737 http://dx.doi.org/10.1107/S1600576717011438 Text en © Jesse Bennett Hopkins et al. 2017 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/2.0/uk/ |
spellingShingle | Computer Programs Hopkins, Jesse Bennett Gillilan, Richard E. Skou, Soren BioXTAS RAW: improvements to a free open-source program for small-angle X-ray scattering data reduction and analysis |
title |
BioXTAS RAW: improvements to a free open-source program for small-angle X-ray scattering data reduction and analysis |
title_full |
BioXTAS RAW: improvements to a free open-source program for small-angle X-ray scattering data reduction and analysis |
title_fullStr |
BioXTAS RAW: improvements to a free open-source program for small-angle X-ray scattering data reduction and analysis |
title_full_unstemmed |
BioXTAS RAW: improvements to a free open-source program for small-angle X-ray scattering data reduction and analysis |
title_short |
BioXTAS RAW: improvements to a free open-source program for small-angle X-ray scattering data reduction and analysis |
title_sort | bioxtas raw: improvements to a free open-source program for small-angle x-ray scattering data reduction and analysis |
topic | Computer Programs |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5627684/ https://www.ncbi.nlm.nih.gov/pubmed/29021737 http://dx.doi.org/10.1107/S1600576717011438 |
work_keys_str_mv | AT hopkinsjessebennett bioxtasrawimprovementstoafreeopensourceprogramforsmallanglexrayscatteringdatareductionandanalysis AT gillilanricharde bioxtasrawimprovementstoafreeopensourceprogramforsmallanglexrayscatteringdatareductionandanalysis AT skousoren bioxtasrawimprovementstoafreeopensourceprogramforsmallanglexrayscatteringdatareductionandanalysis |