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BioXTAS RAW: improvements to a free open-source program for small-angle X-ray scattering data reduction and analysis

BioXTAS RAW is a graphical-user-interface-based free open-source Python program for reduction and analysis of small-angle X-ray solution scattering (SAXS) data. The software is designed for biological SAXS data and enables creation and plotting of one-dimensional scattering profiles from two-dimensi...

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Detalles Bibliográficos
Autores principales: Hopkins, Jesse Bennett, Gillilan, Richard E., Skou, Soren
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5627684/
https://www.ncbi.nlm.nih.gov/pubmed/29021737
http://dx.doi.org/10.1107/S1600576717011438
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author Hopkins, Jesse Bennett
Gillilan, Richard E.
Skou, Soren
author_facet Hopkins, Jesse Bennett
Gillilan, Richard E.
Skou, Soren
author_sort Hopkins, Jesse Bennett
collection PubMed
description BioXTAS RAW is a graphical-user-interface-based free open-source Python program for reduction and analysis of small-angle X-ray solution scattering (SAXS) data. The software is designed for biological SAXS data and enables creation and plotting of one-dimensional scattering profiles from two-dimensional detector images, standard data operations such as averaging and subtraction and analysis of radius of gyration and molecular weight, and advanced analysis such as calculation of inverse Fourier transforms and envelopes. It also allows easy processing of inline size-exclusion chromatography coupled SAXS data and data deconvolution using the evolving factor analysis method. It provides an alternative to closed-source programs such as Primus and ScÅtter for primary data analysis. Because it can calibrate, mask and integrate images it also provides an alternative to synchrotron beamline pipelines that scientists can install on their own computers and use both at home and at the beamline.
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spelling pubmed-56276842017-10-11 BioXTAS RAW: improvements to a free open-source program for small-angle X-ray scattering data reduction and analysis Hopkins, Jesse Bennett Gillilan, Richard E. Skou, Soren J Appl Crystallogr Computer Programs BioXTAS RAW is a graphical-user-interface-based free open-source Python program for reduction and analysis of small-angle X-ray solution scattering (SAXS) data. The software is designed for biological SAXS data and enables creation and plotting of one-dimensional scattering profiles from two-dimensional detector images, standard data operations such as averaging and subtraction and analysis of radius of gyration and molecular weight, and advanced analysis such as calculation of inverse Fourier transforms and envelopes. It also allows easy processing of inline size-exclusion chromatography coupled SAXS data and data deconvolution using the evolving factor analysis method. It provides an alternative to closed-source programs such as Primus and ScÅtter for primary data analysis. Because it can calibrate, mask and integrate images it also provides an alternative to synchrotron beamline pipelines that scientists can install on their own computers and use both at home and at the beamline. International Union of Crystallography 2017-09-05 /pmc/articles/PMC5627684/ /pubmed/29021737 http://dx.doi.org/10.1107/S1600576717011438 Text en © Jesse Bennett Hopkins et al. 2017 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/2.0/uk/
spellingShingle Computer Programs
Hopkins, Jesse Bennett
Gillilan, Richard E.
Skou, Soren
BioXTAS RAW: improvements to a free open-source program for small-angle X-ray scattering data reduction and analysis
title BioXTAS RAW: improvements to a free open-source program for small-angle X-ray scattering data reduction and analysis
title_full BioXTAS RAW: improvements to a free open-source program for small-angle X-ray scattering data reduction and analysis
title_fullStr BioXTAS RAW: improvements to a free open-source program for small-angle X-ray scattering data reduction and analysis
title_full_unstemmed BioXTAS RAW: improvements to a free open-source program for small-angle X-ray scattering data reduction and analysis
title_short BioXTAS RAW: improvements to a free open-source program for small-angle X-ray scattering data reduction and analysis
title_sort bioxtas raw: improvements to a free open-source program for small-angle x-ray scattering data reduction and analysis
topic Computer Programs
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5627684/
https://www.ncbi.nlm.nih.gov/pubmed/29021737
http://dx.doi.org/10.1107/S1600576717011438
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