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Characterization of 31 microsatellite markers for Sinocalycanthus chinensis (Calycanthaceae), an endemic endangered species(1)
PREMISE OF THE STUDY: Thirty-one microsatellite markers were developed for Sinocalycanthus chinensis (Calycanthaceae), an endemic endangered species in China. METHODS AND RESULTS: Twenty-one polymorphic and 10 monomorphic microsatellite markers of S. chinensis were developed using methods of biotin-...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5628024/ https://www.ncbi.nlm.nih.gov/pubmed/28989820 http://dx.doi.org/10.3732/apps.1700009 |
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author | Wang, Xiao-Yan Jin, Ze-Xin Li, Jian-Hui Li, Yuan-Yuan |
author_facet | Wang, Xiao-Yan Jin, Ze-Xin Li, Jian-Hui Li, Yuan-Yuan |
author_sort | Wang, Xiao-Yan |
collection | PubMed |
description | PREMISE OF THE STUDY: Thirty-one microsatellite markers were developed for Sinocalycanthus chinensis (Calycanthaceae), an endemic endangered species in China. METHODS AND RESULTS: Twenty-one polymorphic and 10 monomorphic microsatellite markers of S. chinensis were developed using methods of biotin-streptavidin capture and capillary electrophoresis. The number of alleles per locus was one to 20 with an average of 4.677 in 90 individuals taken from two populations in Zhejiang Province and one population in Anhui Province in China. Mean observed and expected heterozygosity across all three populations were 0.403 ± 0.061 (0.033–1.000 per locus) and 0.510 ± 0.043 (0.032–0.797 per locus), respectively. Of these 31 loci, 29 were successfully amplified in Calycanthus floridus. CONCLUSIONS: These microsatellite markers will be useful for studies of population genetic diversity and phylogeny of S. chinensis and C. floridus. |
format | Online Article Text |
id | pubmed-5628024 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-56280242017-10-06 Characterization of 31 microsatellite markers for Sinocalycanthus chinensis (Calycanthaceae), an endemic endangered species(1) Wang, Xiao-Yan Jin, Ze-Xin Li, Jian-Hui Li, Yuan-Yuan Appl Plant Sci Primer Note PREMISE OF THE STUDY: Thirty-one microsatellite markers were developed for Sinocalycanthus chinensis (Calycanthaceae), an endemic endangered species in China. METHODS AND RESULTS: Twenty-one polymorphic and 10 monomorphic microsatellite markers of S. chinensis were developed using methods of biotin-streptavidin capture and capillary electrophoresis. The number of alleles per locus was one to 20 with an average of 4.677 in 90 individuals taken from two populations in Zhejiang Province and one population in Anhui Province in China. Mean observed and expected heterozygosity across all three populations were 0.403 ± 0.061 (0.033–1.000 per locus) and 0.510 ± 0.043 (0.032–0.797 per locus), respectively. Of these 31 loci, 29 were successfully amplified in Calycanthus floridus. CONCLUSIONS: These microsatellite markers will be useful for studies of population genetic diversity and phylogeny of S. chinensis and C. floridus. Botanical Society of America 2017-09-29 /pmc/articles/PMC5628024/ /pubmed/28989820 http://dx.doi.org/10.3732/apps.1700009 Text en © 2017 Wang et al. Published by the Botanical Society of America https://creativecommons.org/licenses/by-nc-sa/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (CC-BY-NC-SA 4.0 (https://creativecommons.org/licenses/by-nc-sa/4.0/) ), which permits unrestricted noncommercial use and redistribution provided that the original author and source are credited and the new work is distributed under the same license as the original. |
spellingShingle | Primer Note Wang, Xiao-Yan Jin, Ze-Xin Li, Jian-Hui Li, Yuan-Yuan Characterization of 31 microsatellite markers for Sinocalycanthus chinensis (Calycanthaceae), an endemic endangered species(1) |
title | Characterization of 31 microsatellite markers for Sinocalycanthus chinensis (Calycanthaceae), an endemic endangered species(1) |
title_full | Characterization of 31 microsatellite markers for Sinocalycanthus chinensis (Calycanthaceae), an endemic endangered species(1) |
title_fullStr | Characterization of 31 microsatellite markers for Sinocalycanthus chinensis (Calycanthaceae), an endemic endangered species(1) |
title_full_unstemmed | Characterization of 31 microsatellite markers for Sinocalycanthus chinensis (Calycanthaceae), an endemic endangered species(1) |
title_short | Characterization of 31 microsatellite markers for Sinocalycanthus chinensis (Calycanthaceae), an endemic endangered species(1) |
title_sort | characterization of 31 microsatellite markers for sinocalycanthus chinensis (calycanthaceae), an endemic endangered species(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5628024/ https://www.ncbi.nlm.nih.gov/pubmed/28989820 http://dx.doi.org/10.3732/apps.1700009 |
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