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Characterization of 31 microsatellite markers for Sinocalycanthus chinensis (Calycanthaceae), an endemic endangered species(1)

PREMISE OF THE STUDY: Thirty-one microsatellite markers were developed for Sinocalycanthus chinensis (Calycanthaceae), an endemic endangered species in China. METHODS AND RESULTS: Twenty-one polymorphic and 10 monomorphic microsatellite markers of S. chinensis were developed using methods of biotin-...

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Autores principales: Wang, Xiao-Yan, Jin, Ze-Xin, Li, Jian-Hui, Li, Yuan-Yuan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5628024/
https://www.ncbi.nlm.nih.gov/pubmed/28989820
http://dx.doi.org/10.3732/apps.1700009
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author Wang, Xiao-Yan
Jin, Ze-Xin
Li, Jian-Hui
Li, Yuan-Yuan
author_facet Wang, Xiao-Yan
Jin, Ze-Xin
Li, Jian-Hui
Li, Yuan-Yuan
author_sort Wang, Xiao-Yan
collection PubMed
description PREMISE OF THE STUDY: Thirty-one microsatellite markers were developed for Sinocalycanthus chinensis (Calycanthaceae), an endemic endangered species in China. METHODS AND RESULTS: Twenty-one polymorphic and 10 monomorphic microsatellite markers of S. chinensis were developed using methods of biotin-streptavidin capture and capillary electrophoresis. The number of alleles per locus was one to 20 with an average of 4.677 in 90 individuals taken from two populations in Zhejiang Province and one population in Anhui Province in China. Mean observed and expected heterozygosity across all three populations were 0.403 ± 0.061 (0.033–1.000 per locus) and 0.510 ± 0.043 (0.032–0.797 per locus), respectively. Of these 31 loci, 29 were successfully amplified in Calycanthus floridus. CONCLUSIONS: These microsatellite markers will be useful for studies of population genetic diversity and phylogeny of S. chinensis and C. floridus.
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spelling pubmed-56280242017-10-06 Characterization of 31 microsatellite markers for Sinocalycanthus chinensis (Calycanthaceae), an endemic endangered species(1) Wang, Xiao-Yan Jin, Ze-Xin Li, Jian-Hui Li, Yuan-Yuan Appl Plant Sci Primer Note PREMISE OF THE STUDY: Thirty-one microsatellite markers were developed for Sinocalycanthus chinensis (Calycanthaceae), an endemic endangered species in China. METHODS AND RESULTS: Twenty-one polymorphic and 10 monomorphic microsatellite markers of S. chinensis were developed using methods of biotin-streptavidin capture and capillary electrophoresis. The number of alleles per locus was one to 20 with an average of 4.677 in 90 individuals taken from two populations in Zhejiang Province and one population in Anhui Province in China. Mean observed and expected heterozygosity across all three populations were 0.403 ± 0.061 (0.033–1.000 per locus) and 0.510 ± 0.043 (0.032–0.797 per locus), respectively. Of these 31 loci, 29 were successfully amplified in Calycanthus floridus. CONCLUSIONS: These microsatellite markers will be useful for studies of population genetic diversity and phylogeny of S. chinensis and C. floridus. Botanical Society of America 2017-09-29 /pmc/articles/PMC5628024/ /pubmed/28989820 http://dx.doi.org/10.3732/apps.1700009 Text en © 2017 Wang et al. Published by the Botanical Society of America https://creativecommons.org/licenses/by-nc-sa/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (CC-BY-NC-SA 4.0 (https://creativecommons.org/licenses/by-nc-sa/4.0/) ), which permits unrestricted noncommercial use and redistribution provided that the original author and source are credited and the new work is distributed under the same license as the original.
spellingShingle Primer Note
Wang, Xiao-Yan
Jin, Ze-Xin
Li, Jian-Hui
Li, Yuan-Yuan
Characterization of 31 microsatellite markers for Sinocalycanthus chinensis (Calycanthaceae), an endemic endangered species(1)
title Characterization of 31 microsatellite markers for Sinocalycanthus chinensis (Calycanthaceae), an endemic endangered species(1)
title_full Characterization of 31 microsatellite markers for Sinocalycanthus chinensis (Calycanthaceae), an endemic endangered species(1)
title_fullStr Characterization of 31 microsatellite markers for Sinocalycanthus chinensis (Calycanthaceae), an endemic endangered species(1)
title_full_unstemmed Characterization of 31 microsatellite markers for Sinocalycanthus chinensis (Calycanthaceae), an endemic endangered species(1)
title_short Characterization of 31 microsatellite markers for Sinocalycanthus chinensis (Calycanthaceae), an endemic endangered species(1)
title_sort characterization of 31 microsatellite markers for sinocalycanthus chinensis (calycanthaceae), an endemic endangered species(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5628024/
https://www.ncbi.nlm.nih.gov/pubmed/28989820
http://dx.doi.org/10.3732/apps.1700009
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